GgaINT0000221 @ galGal3
Intron Retention
Gene
ENSGALG00000013254 | LOXL3
Description
NA
Coordinates
chr4_random:109216-112289:+
Coord C1 exon
chr4_random:109216-109427
Coord A exon
chr4_random:109428-112069
Coord C2 exon
chr4_random:112070-112289
Length
2642 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GCTCTGGTCTCTCCTTGCAGGCT
3' ss Score
10.86
Exon sequences
Seq C1 exon
ACGGAGCAGAGCCACGTGGAGGAGGTCCGTCTGCGCGCGGTGGTGTCGGGGGCACAGCGGCGGCTGCCAGTGACAGAGGGCATCGTGGAGGTGCGCTACAAGGATGGCTGGGCACAGATCTGCGATGAGGGCTGGGACAGCAAGAACAGCCACGTCATCTGCGGCATGATGGGCTTCCCCACTGAGAAGAAGGTGAACAGGAACTTCTACAA
Seq A exon
GTAAGTGGGGCTGGCTGGGAGCCTGTGGGGCTGGGGATGGAGGAGCGCTTCTGGGGCACAGCGGGCTGTGCTATTCAGCATCCCCCCACCCTGCCCGAGTCCCACAGGCCATGTGGGCACTGCTAACCCAGCTGGGGGCCACAGCACAGCTGGGAGTTGTGGCTGTTGGTCTTCCCTATACATCACTGCCCAAGATGGCAGGTTTTGGTCCCTGGCAGTTGTGCACTCCCACGTTTCCCTCTGGTGGGGAGTGTGGGGAACCCTGTGCTGAGGGGCGGTTTGTGCTGAGCTGGGCAGAGACGCTGCCGCAGCACCACTGCCCGATGTCCTGGGGTTTGGCCATGAGTGTGCAGCCCTGGGCATAGCTGTGGGTGTGCTGCGCAGTGTGTGGCTGTGGCTGTGCTGCCCGCAGTGTGGGTCAGTGCTGTGTGCACTACTGACAGTGCAGCCACGGTGTTGCCCTGCAGGCGGCTGAAGCGTGCAGCCAGGACGAGGGGCCGGAGCATGAGGCCAGGCGGGAGGTAAGGGGCTGCGACTGAGCCCTGCTGCACCCTGGGCAGAGCTGGGCTGTCCTGTCCCACCATTCTCTGCTGTCTGAGTGGATCCTGCAAAGGTGGATCTGCTTGGAACAGATCAAGGGCCTGGGCTGTGCTGAGCGGGATGACTCCATCCTGGTGGGACCTGTCTGGCCCACACGGTCCCTTGTCCCCTTGAAGAGATGCTCTTTTCCCAGGCCGGTCATTCCCTAGGCAGAGCAGCCTCATCCCATGCACTGGGCAGGTGCTGGAGATGCAGGGTCCCAGTGGAAGGCATAGAGAAGGCTGGAGCACCCTGTGCTGCGCCCTATGGGGACAGGGAGGCCTTGGGAAGGAGCTATCTCTGCAGAAAGCTGCAGTGGGGAAGCTGGAAATGCTGCGTACCTCCTATTCCTCATGAGCTGAGCTCACATGGAGGATAGGAGCTTGCTCAGCAGTGCTGGTGATGCTGGCATGGTGTGGCAGCCCTTGTCCCAGGATCCGCATCTGCCTGGGATCTCTTTCACTATCATTTTGCTGCCATTCTGCATGACCCAGGGACAGTGTAGCTGCCCTTTTCCTCTGGCCCTGAACTGCTACTGCCAGATTTGCTGTGATGCTGCCCAGCTCTGTGTCACCAGCACTGCTCCTGCAGCTCTGCCTGTGCTGTTGATGGAAACCCAGGGGGATCTGGGATCAGGGACCATGGGGTCTCCTCAAGCTCTCATCAGTCTCCTTTGCTGCAACCTGCTGTTTTTCCTTTGGCTGGTTGGTGCCCATTGTGTGGGCATTTCCCACGTGGGTAAAGTACAGCACCACGGTCTGCCTGGCACAGGAGCAGCTTTGGGCTGATCTCAGACTGTGGGGTCACGAAGTAATCCCAGCTGGGAGGGACCTCAGGGTTCTGGTCTTTGTGCAGTTGGCTTCTGAAAACCTCTGAGGACGGAGATCTCACAGTCCTGTGGCCTCTGCTGCAATGCTGAGTGACACTCACTAGGAAAATGTTCTCCTTGCATCTAATGTGATCCTTTCCTTGCAAATCACACCCGCTTCCTCTTGTGCACCTCTGACAGCTGTGCAGAGCTCCCTGGCAGCCCCGTGTCAGTGCAGGTCAGGGCTGCCCGAGCCCCACAGCCAAACTGTCTCCAGTTATTCCTCCTCATAGCAGTACTGCGCCCACCTCTCCCAGCCCTGTCTGTCCCTGTGCCCTCTGCAGATGTCCTTCTGTATGGGGGCACAGGATCCAGCTGTGGTCCCATGAGTGCTGATGGGAGCTGATGTCCTCCAGCCGTTCCTGTGACTCAGGTTCCTGGCTGCCCGTGCAGTGCCCTGGGGCTGTGCAGGCTGACATAGACCAGCCATGGGGGTGGCTGTGCCTGATCCCTGGTCTCTGGGTGCTGTCCATCCCCTGCCCCATTCTGGGGCTCTGCTTCCCTGGTCCCTGGAGCTGTGGTTTTGCTCAGCATCTCAGGGCAAAGACAAAGCGTCTGTGCAGGGGCTGTGCCACTATCACACTTTTTTCCTGCTGAGCTTGCTGGGTGTGCTGCTCCCCTTGGAGCACACAGTGACATTGCCTGCAGTCCAGATGAGGATAGAGGCATATCTCACTTGCACCCAACAGATCAAATTGTTGCGCTGTTGTTTGATCTTCTGCTGTGTGCCAAAGCAGCACAGGATGTTGCTGCATCTGTCACAGTTTCCTGGTGAGATGTGGGCAGGAAACTGCATCGCTGCTGTGGAGAACAGTTGTGTCACATTGCTGGCAGCAGATGATGCTTTGTATCCACACATGACGTGAAGGGGAGTGCGTGAGGCTCCCTGGTGGCCCGCTCGGTCTGGGCCACCTTCACGGTTGTTTTCTGTTTTCCAGGCTGGCCTCCAAATCTCAGCCTAAACAAAAGCGCAGGGAGGACGTAGGGTCCAGGAAGAGGTAAATGGCTCCCGTGGAGAGCCTGAGTGCCAGGATCCCAGCTCAGCACTGCCAAAGCCGTGTGTGTCCCTGCACTGCTGGGACGTGGGGAATGGAGCAGGCAGGGGTGGGATCCCAGGGGCAGGGACCGTACAGCTGCAGGCAGGTGACACCTCTGCTCTGCTGGCTGTTGCTCAGGCTCTGGTCTCTCCTTGCAG
Seq C2 exon
GCTGTTTGCGGAGCGGCAGCAGCTCAACTACCGCCTGCACTCAGTGTCCTGCACAGGGACAGAGGTGCACATCTCCATGTGCACGTTCCAGTTCTACCGGGGCAACTCCTCAGCAGCCTGCAGCACTGGCATGCCCGCTGTTGTCAGCTGCCTGCCCGGGCCCCTCTTTGCTACCAGCAGCACCCAGAAGAAGAAGCAGCGCCAGCAGCAGCAGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013254:ENSGALT00000021647:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.176
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(50.0=73.2)
A:
NA
C2:
PF0053013=SRCR=PD(49.0=68.9)
Main Inclusion Isoform:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]