BtaINT0087012 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005903 | LRP5
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N1K8]
Coordinates
chr29:46552646-46556117:+
Coord C1 exon
chr29:46552646-46552855
Coord A exon
chr29:46552856-46555991
Coord C2 exon
chr29:46555992-46556117
Length
3136 bp
Sequences
Splice sites
5' ss Seq
TCTGTACGT
5' ss Score
4.47
3' ss Seq
TCCTTCTCTTCTCTCCACAGCAG
3' ss Score
11.56
Exon sequences
Seq C1 exon
GGGCCAACCGCCTGACCCTGGAGGATGCCAACATCGTGCAGCCCGTGGGCCTGACCGTGCTGGGCAAGCACCTCTACTGGATTGACCGCCAGCAGCAGATGATCGAGCGTGTGGACAAGACCACGGGGGACGCACGGACACGAGTCCAGGGCCGTGTTGCGCACCTGACCGGCATTCATGCTGTGGAGGACATCAGCCTGGAGGAGTTCT
Seq A exon
GTACGTGAGGGGTGGGCAGTGGGGCTGTGCGGGGGCCCCCGAGGGGAAGGAACGCCTCTGCACGGAGCACAGCAACCCCTGGACTGGCTCCCCTGGAGAAAGGGAGGAGGCCGGACCAAGGCGAGAGTAGGGCTGAGGCCGTTTTCTTTCTGGCTTTGTCTGGGCCCAGTCTCGGTGACCAGAGGCCACCCTCAGGCCCTCACCCCATCCCCTTCTCCATCAGCAACAGATTGGACCGCTCTGATTTCTGTTTCTAGCTCTCGAACCCACTCTGCTTTCCAAGTGCCTGCGATGAGATTTGGCCCAGCTTTAGATTAATCACCCTTTAGATTGACTCTGAATCAACCGATTAGTAACCTTAATTACACCTGTATGTCCCCCCACCAAGAAAGGTGATAAAACCATGGGCATGACACTCATCGCATCTTCCCTAGCTGGGGAGCAGGGTGGGGAGTTTGGGGGGCACTTTAGGATTCCGTCCACCACAGCCTGGCTGTGTCCAGGAGCCTGAGAGGGGATTGTCTGTAATCAGGACCTGTGGCTCCTCCACCCGGTCCTTGGCTCTATGTGGGTGTGGAGGTGTGTGTGCGCGTGTGTAAGTGTCTGCCTGTCTGTCTGCTTGCTTTTCTCTCTCTATTCAGTATGTACACGGCACCCAGCGGGCTGCCCGCTGAGTGAGCAGGGCCTTCGCTGCCCTTGTCTTGTGACGCCTGCGGTCTGGCCGCCGTCCATGCCCCGGGGCTGCCCAGCCTCACCCCAGCCCCTCCCTGTCGGCGTTGCCTCGGCCACACTGCATTGTGACTCTTTTGTACCCCAGCCCTGTTTTCAGTATATTATTACATTATATACGTTATTTCACAATAGTTTATAATTTCAAATGAGATTATATTTTACAGCTGACAAAAGTAGAACTCAGTAAGGGTATTGCTTCCCCTATCACCCAGCCAGTAAACCCAAGGGGGCTTGAATTTGCAACCAGAGCCCAGGCTTTAGCCACTTGAGTTTTTTTCTGTTAGGCTTCCTGCTCAGAATCAGGGACATGACCTCCGAACCGGCCACTTCTTTGTTGACTGCTCGGTGGCAATTTCTGTGGTAATCAGCTGGGTCCCAGATAAGTGAAGTCACCAGGAAACTAAACCAAGGCGCCCCATACCTATGGGTTAGCATGCTTGTGTTCATCTGGCCTCTTAGTCCATGCTCAGCCAAGTCACGGATTCCTGGGTGTCACTGGCAGATGGTCAGAACGGTGAATGCCCAGCCCACAAAGGTCAAGACCCGCTGCCTACTGGTGTCGGCAGAAAGCCAGGGGCACTGACCGGCGCTCCTTGGAACCAGGGCCGGGAGGGCCAGGAAATGCTCAGTGAGCAGGTTTGAGGTTGGAAACTGGGGACATGTCTGTGAGCACCAGTGCGCGGGCTCTGGGGTGACATGGAGAGGCTCCTCGTTTTGGGTAAGCGTAGGAAGTCCTTCGGCGGGCTCTGCCATGTTGATCTGGGACGTGGGCCACCCATCTGCGTCCGCACACGATCCCACAGCTAACCTCTAAACCAGGGGTGGCACTCTGCAGCTTGTGGGTCCCTGTCATCCTGGCTGCCTTTGCCCTGCAGCTGGCTGACCGGGGGTCACACCGGTGGCCTGGCCTGTGAAGCCAGAATTATTTACTTTCTCATTTTTTATGGAAAAAGTTGGCTGACCCTGCTCTCAACTATGACTCTGCCATTTTAAAAACACCTAATCCTTGAGATGGAGGAGGAAAAAAACCATGATTTGCCTTCAGGGGTAGAGGTGAGGAGCTGAGTGTGCTTTGCCATTTCCTCTTACCTGGGGGAGGTCAGCCACCTTCCCAGGCTCCTAACCATTGTCCAGAGATTGGGCACAGGAGGTTAATGGAATTGAAATATTCAAGGTTCCCGGGGTTCACCACCTTTACTATGTTAATTTCCACGTGTATTAGTTTACTGCAGCTGCTGTAACAAGCGACCACAAACTGGGTGACTTAGAGCAGCAGAAATGCATTCTTTCCCGGTTCTGGAGGCCGGGAGTTCAAAGTCAAGGTGCCTCCAAGGCTGTGCTCTCTCTGGAGGCTGGGAATGAGGGGCTGAGGGGATGGGGACCAGGGGGATGCAAAGACGGTTCATGGCTACAGGTGTGCTTGTGGGTGCACCATTGAGGCTGGAAATGAGGGGCTGAGGGGATGGGGACCAGGGGGAGGCAAAGACGGTTCACGGCCACAGGTGTGCTTGTGGCTGCACCACTGGGGCTGGGAACGAGGGGCTGAGGGGATGGGGACCAGGGGGAGGCAAAGACGGTTCACGGCCACAGGTGTGCTTGTGGCTGCACCATCGCAGCCTCTGCCATCACATGGCCTCTCCCCTGCCTTCACCTCTTGCCTGCTTGCACGCTAAGTGGCTTCAGTTGTGTCTGACTTTGCGACCCCATGGACTGTAGCCCGCCAGGCTCCTCTGTCCATGGGACTCTCCAGGCAAGAATACTGGAGTAGTTGCCATGCCCTTCTCCAGGGGATCTTCCCAACCCAGGGACTGAACCTGCATCTCCATGTCTCCTGCACTGGCAGGCAGGTTCTTTACTGCTAGCACCGCCTGGGAAGCCCTCACCTCTTAGGCGCTCTCTTATAAGGATACTTGTTAGTAGATTTAACGCCCACCCAGATACTTCAGAATTAGACCCCATCTCAAGATCTTTAATGTGATCACATCGTTTGCAGAGACCCTTTTCCCCAGTAAAGGTCACATTCTCAGATTCCGGGCGTTAGGATGTGGACATATCTTTTGGGGGGCCCACCACTAGCCCACTACACCGTGAGAGACAGACACGCAGGCGGGCGGTGTAGCATGATGGCTGTGGGCACGGTGGGAGCTGGTGCAGAAGGCTGGGGTGTGACGTCAGGAAAGTTCTAGATGTGCTCTTGGCCTCCACTTCCTCATTGGCAAAATGCAGCGTCCACAGAAACAGACTCGCCTGGCTGCCCTAGGAATGAAGTGAGAGGGTTGACTGCACCCCTGTGGGAGTGCCAGTTATTGTGAGGTCTTGCCTGGCCCTCACCGCCTCCCTCCTCTAGGCTGAAGTCCTGAGACTGGAGGCGGAGTCCGACCCCCTCCTTCTCTTCTCTCCACAG
Seq C2 exon
CAGCCCACCCCTGTGCCCGCGACAATGGAGGCTGTTCTCACATCTGTGTCGCCAAGGGCGATGGGACGCCGCGCTGCTCATGTCCGGTCCACCTCGTGCTCCTGCAGAACCTGCTGACTTGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005903:ENSBTAT00000007756:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(48.7=26.8)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=86.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]