GgaINT0059815 @ galGal3
Intron Retention
Gene
ENSGALG00000006998 | Q5ZKF9_CHICK
Description
NA
Coordinates
chr5:17700379-17703128:+
Coord C1 exon
chr5:17700379-17700588
Coord A exon
chr5:17700589-17703002
Coord C2 exon
chr5:17703003-17703128
Length
2414 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
CTTTCTTTGTGCTTCTCCAGCTG
3' ss Score
10.12
Exon sequences
Seq C1 exon
GTGCTAACCGTGTGACTCTGGAGGACTCCAACATCCTTCAGCCAATGGGCCTGACTGTGCTGGGGAATCACCTGTACTGGATTGATCGGCAGCAGCAGATGATTGAGAGAGTGGAGAAAACTAATGGGTACAAAAGGACTAGAATTCAAGGCCGAATTGCTCACCTAACAGGCATTCATGCTGTGGAGGAACTTGATATGGAGGAATTCT
Seq A exon
GTGAGTTTCTTCAAATACCTGATGTTTTTCACTCTTGGTCACTGTCTCAAGCTCCTCATCCAGCTGCATGTTTCAGTAATATTGGCTTTAGGTTAGACCATGGAGTGCTTTCAACTTGAGGGGCTGGACTCTAATAGAGGAGGAGAAACAAGTTTCTCATTCTTGTCCAGAGGAAGCCTTTTGCACAGCTAGAATACATGATTTCACAGCACTTAGTTACCTGCTTTTGTATCAGCTCATGTGATAGTGAATTAACTCTAAAAGCTGTTTAGAAACAATTAATGATTGCTGATTTTTTTAAGTACAGCCAAGTAACAGAGTTGGAAATGCTTTTATGAAGAAAGAGAAGGGAGTAGTATCTGTCTTTTCTCATGGGGTTTCAGACCTGTTTGTAAAGCATGACTGGTTTGACTTAGCATGACTGGTGGTATAAAAGCCTCCGGTAGGGGAAGGAGAATGGGCAGGGTGCTCCTAAAACGTACCTTTGTGGATGTGGAATTTCTTCTTGATTAGAAGTGGAGCCATTTTAGGTGCTCCGTTCTGAAAGAGGCCAGTCATGTTGGACCTTATTTTTCTGGCTTGCTGACTCAGTTCCTGTGCTCTGAGTGTTGAACTTCAAACATTCTGTGCAGGATTATTCTTTAGTGAGTACCTGGGAGACAGGAGAAGCCTTCATCCATCCTCATGATGCCTCGTTCAAGGAAATAGGCCAGTGAGGTAGCTACCTCAGGACTCACTGCTGTTGCAGGGAGAGAAGCAGCAAACTCTTCTAGATGAACCCTGTCTTTCATATTTCTCCCCCTTCAAGGCACTCTGAATGCAGAGTGAAGAAACCTGGGAAGAGGAATATCCTTACTTTATCTGGGCAGTAGTCAGTAAAGTTTTTCCCCTCTACCCATGTTCCGCCTTGCCCTGGGGAGAGATGGGGGAGTATAAGACTACAGTATGGCAGAGTAAGGGAATGAAGGTCTGCGGTCTGGAGAGGAGTAATGCTTCCAGTATGGGAAGGGTTGGGGGCAGAAGTCTTGTATAAGGAGGATGCACATGAGTGCAAGCTTACCTATATGGGTAAACTGTTGGAAGGAAGGTAGCGTATTTAAGCTGTAGCTGATTCTATTTGCTAATCCTTATCCAGATGTTCTTTTTTCCTTCACAACACAGTTTTTCTTCTTCTGTGACATTTCTCATATTTTAGTGCCTTTCAAAGGCAGTAAGTACATAACGATGGAAAAATGATTTTTCTTTAAATCTCAACACTGTTAATAAGAAAAAAGGGAGAGAGCAGACTTCATATCCCATATGTTTTTAAGAATGTTTATTTTATTATGGCAAGGGTAATGTTTCTTCTGAGTTGCGCTGAAAGGAAGCACTTTTTTACATCTGAAATCTGTCCAATGAAGGTGACTTCTGTTTCAACAGGAGAGTAAAAATAAACACACACGTGTGCATGCCCACACTGATGTACGTGAGGGCACTTTTTCTGCTAGCAACCCGTGCTTCAAACAGTAGCATCTCCAACATTGTGTTAAATTAATGAATTTGTTAAAGGTGAAAGCAGACTGCTGAGAAGCCCAAACAGATGGAAAAGAACTTTGGCACAGAAGTAGTGATAACTGTACCGTTTCTTCCCAGTGGAAGTTCTTGATCCGTACTGGTAGTAAAGAATGCATTGTACAGTGGCATCGTAAGTAACAGATCACTTCAGCAGATGCTGTAAAGTACTCAGCTGGGCTGGGATACTCAGATAGTGCCTTCACCGGTCTGTGCCAGTTTCTCATCCAACTAATGCTTCCTTAGTTTGATTTCATTAGAAATTATTGGGTTCTCTGCACTTTCAAATAACTGATTGAGGAACATGGCCATGTAGCTTCCCGTTTTACAGATACATAAATAACAACTGTGTGCGCTCATATTTCAGTTTTGTGAGTAATAGGGAAGTGGTGAGGGCACATAGGGGATGAGGGATAGGTCTGGATAGTAAGAGGTCTTGGAGATTAGAGGCAAATTCCTCAGGGTTTGGTGGGCTGGCATTCTGCAGCAATGACTGTTAATTCTTGGTGCGTGGCAACACTAGAAGTGCAGATGGGATGTCTGGGTTTGCCTTAAACGTGACCTTCTCAAATCTGCTTCCTCACTTCTCTTCACCTGAGCTCCCACATTCATTTTATAAGTTCTTTGAAGGTCTCTGTATCACTGCAACCAGGAGAAATATAGTCCTCGCGAAGTAGTAAATCAACTTTTGAGCGCAGAACTGAAAAACCTTGTATTTATCTTCCTACAAATTTGCAGTGAAATCTTAGTTACTCAACTAGAAGTGTTTTATGAGTGGTTTTGTGAGTTTGTCTTTGCTAGTAGTTAAGCTTTTCTTTTTTTTTTTAACACTATCTAATCATTCTTTCTTTGTGCTTCTCCAG
Seq C2 exon
CTGCACATCCGTGCTCCCGTGACAATGGTGGGTGCTCACACATCTGCATTGCCAAAGGGGATGGGACTCCAAGATGTTCGTGTCCAGAGCACCTTGTGCTCCTGCAGAATCTCTTAACGTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006998:ENSGALT00000011330:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(48.7=26.8)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=86.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]