BtaINT0087022 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005903 | LRP5
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N1K8]
Coordinates
chr29:46521128-46523467:+
Coord C1 exon
chr29:46521128-46521524
Coord A exon
chr29:46521525-46523295
Coord C2 exon
chr29:46523296-46523467
Length
1771 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
GACGTGTGCTTCTTCTCCAGCCT
3' ss Score
7.48
Exon sequences
Seq C1 exon
GGGCAGAGGAGGTGCTGCTGCTGGCCCGGCGGACGGACCTGCGGAGGATCTCGCTGGACACGCCGGACTTCACGGACATCGTGCTGCAGGTGGACGACATCCGGCACGCCATCGCCATTGACTACGACCCGCTGGAGGGCTACGTCTACTGGACGGACGACGAGGTGCGGGCCATCCGCAGGGCATACCTGGACGGGTCGGGGGCACAGACGCTGGTCAACACCGAGATCAACGACCCTGACGGCATCGCGGTCGACTGGGTGGCCCGCAACCTCTATTGGACTGACACCGGCACCGACCGCATCGAGGTGACGCGCCTCAATGGCACCTCCCGCAAGATCCTGGTGTCCGAGGACCTGGACGAGCCCCGTGCCATCGTGCTGCACCCCGTGATGGG
Seq A exon
GTAAGGCTGGGAGCTGGGCCGAGGGGGGCTGGGGGTCCCGGAGCTTTCTCCTCTTCAGGAAGAAGCAGATGTCTGGTTTAGGAGAGCTTGCCTTTCTAATGAGCTCCCAGGTGATGGGCTGATCTGGGAACCAGACTGAGAAGCTCCAACACAGAGCTTGGTTAGGTTTATAGAAAACCCTAGAGACCTTGGGTAAGGCATTTCCCACCCTGGGCTTCAGTCTCCTCACCTGCGAAATAGCACTGTCCACCGTGAAATTTCTGGGCCAGCAGTGGTGGCGAGAGTGACGGCCGCTGCAGCCCTTACTCCACATGTGCCGAGTCTCTTCTGCGCACGTTCCATGCTGCAGGCACCTTTCCCTCTTGCCCTCACCTGCCGGGGTAGGTCCGTTGGAAGATGCTGAAGCCCAGAGAGGTTAAGTGACTTGCCCAAGGTCACACAGCTGGGAGGCAGGACTTGGACCTGGCAGTCTGGTTCCAACTTTCCCTTGTAGGATTCTGTGAATCTTGTCCATCAGGGTAGGAGCCTTTCTAAGACACCGCCCCGCCCCAGCAGTTCAGAGGGTAGCAGCTGAGCACCTTCCTGCAGCTTCATGACCAAGAACGTAAAACTGGCAGACCCTAAGTGGGGGGCGGGGAGCCCTGAGAGCTCTTGAGGGCTGGGGTTGGGGCTGCAGGGAAGCCCCTGGCCCTCGGTGTGGGATGGGCCCCCCTCAGTGGGCCCGAGTCCTGGGCATGGCCTGGAGGAGCTGGGAGGGCGGCGCTGGGAGACAGCCCCGGGGTGATCGCTGCGGGGGTGGTAACTGAGCTGCGCGGGCCGTAAGCGTGGTAACCGGAGCGCCCAGGGGTCTCTGGGTGCTCTTCCTTTTTCCCCTGGGGCTGAGGCTCCAAGTGACCTGACCCTGCAGGAGGCCTGGTGGCTGGCAGGCTTGCAGTCCATCTGCCCGGGGAGCCTGCGCTCTCAGCCCTGCTCCGTGTGGAGCTGCCTCTGTCTCTAGAAGCCCAGGGGCGTGGTCCTCGGGGTGGGTCACAGGGCTGTGGCTGGACAGGCCCGGGCCTTGAGCCTCGAGCACCGTGGAGCCCAGGGTGGGGCGGTCCGGCAGACAGACGCAGCTCCGTATCGTCTGCCGGGGAGCAAGACCATCCCTCGGGGAGGGCAGGTGGGTGTGAGAGGCCAGTCCCCTGGGTCTGCGGGGCAAGGAGGCAGGAGCTCGTCACCAGTGCTGGGAGCCGGGCTCTGGGCTGGGGAGATGGGGACCTGCTCCCTGCCTGCCCTGATGGAAGCTATCAGGTCAGTGCTCTGCCGGCCTCACTCGAGGGCCCTGTCCTCCCCTGTGGGATGGGGTCGGGTTCTTCTGTGCTGGGTTTGCTCAGGGCACAGTTCTGGATGCTTCCCTGGACTGAAGTGTGCACGCAGACACACAGACACACACACAGACACACACGCGTCTCACGTTGTTTCTCGGGCCAACAGACAGCCTGTGGGCTGCTGAGCTTGGCACCCAGGGCCCTTGAGCTCCTTGAAGGAGGTTCCGCTCTGCCTCCCTCTCTCCCTCTGGGTGCGCATTCCCTGCAGTCCCGGGACCCTCAGCCGGGTGTCTGCTGGCTGCAGTCCCAGAGCCCCAGCTGGTTAAGCCCATGCTGTTCCCCGCGGAGCTCCTGGTGCTGCCCACGGGCTCAGGCGTGATGAGGGTGGGCACCGTTCTCAGTCCCAGGGGTGGACCCGGGACATGACGGACGGGCAGCCTCACGGACGTGTGCTTCTTCTCCAG
Seq C2 exon
CCTCATGTACTGGACAGACTGGGGGGAAAACCCAAAAATCGAGTGCGCCAACCTGGACGGGCAGGAGCGGCACATTCTGGTCAATACCTCCCTGGGCTGGCCCAACGGCCTGGCGCTCGACCTGCAGGAGGGCAAGCTCTACTGGGGAGACGCCAAGACGGACAAAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005903:ENSBTAT00000007756:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
NA
C2:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(33.3=22.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCGCCATTGACTACGACC
R:
GGTTGGCGCACTCGATTTTTG
Band lengths:
342-2113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]