BtaINT0087884 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021957 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr10:86198287-86199617:-
Coord C1 exon
chr10:86199498-86199617
Coord A exon
chr10:86198410-86199497
Coord C2 exon
chr10:86198287-86198409
Length
1088 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
CTTGGACTTCTCTCCCACAGATG
3' ss Score
10.6
Exon sequences
Seq C1 exon
ATATCAACGAATGCCGTCACCCTGGCACCTGCCCTGATGGGAAATGCGTCAACTCCCCCGGCTCCTACACTTGCCTGCCCTGCGAGGAGGGCTACAGGGGCCAGGGCGGGAGCTGTGTAG
Seq A exon
GTGAGGGCTGCCTGCCAAGGCACGGAGGGGGCTGTTTGGCCTGGGGACCCTGGGTTGAGCCCACACTTGGTGGTGGGGGGCAGGGGGAGGCGTGGGCAGAGGGAAATGGCTTGGAGGCTATTCTCTTTCGTGACCCAGCTGGGTTTCCAGATGACGCTGGGGATGAGGTGGGTGTGCTTCAGTTACTGGTGCTCTGCCCTCTGAATCAGCCAGGGTGGGGGGACCCTTAGGCTCCTTGGCCATATCCGTCCAGGAGCTACATACAACCCAAGGTTCCAGAGGCTTCTGTGGCTGGATTCTGCTAGGTAGGCTAAAGGTGCCATGTGTCTTTTGGAAGAGGCTGATGCCAGTGGTGTGGAGGAGGGGTCTTCTGCCCTCCTGGACTCAAGAGCAATCTCTAACACCAATTCTTAAGAGAACGGCGGGAGCTCTTCTCTGGAGGTTGGGGTGGGGGGTGGGTTGCATGTCAGCCATAGGAGGAATGCGCTTTCCCTCAGCCCCCGCAGGAAGAAGGGCCCAGGGCTGGGGATGCCAGGAGGGACTGAGTCGTGAATAGAGACTTTGAGGCTCTGGAGAGGGCAGGCATTTCCCAGGCCTTTGGGACTGCCGCTCAACCGCCCATGCAGAACTTGGCCTCTCTCTGTGTTACCCACTCGCCCGCTGAAGCTGGTGGGTGGGCTGAGAACTTGGGGTCATACCCATTTGGTTGGCGGGGAGGAGACCAGAGAAGTTCAGACTCACTCTAAGGTGAGGCAGAAGTCTTAGACACTTGCCTCCAGGTGTCCTAAGATGGGCCAAACCAATCCCAGGACTGGGTGGGGAACCTGGCCCCCCCTTTTCTAGGAACTTGCAGGGTGCTCTGTGTCACTGGGTGGAGCTGAAATCAGCTCAGGGATGGAAGTTAGTTCGGCGGGGGAAGGGCACCCAGCCTAGGTAGATGGGTCCAGGAGCAGGAATGACTTCTGGTCCTTCCCAGGGTGCTAGGGCCCCTTGGAATGCTGGTTCCCCGGCCTCACAATGGAGACACTTGGCCTGATGCTGGAGGCTGCGCGAGGGATAGGAGGCCAGCTTGGACTTCTCTCCCACAG
Seq C2 exon
ATGTGAATGAGTGTCTGACCCCTGGGGTCTGCACCCACGGAACATGCATCAACCTGGAGGGCTCCTTTAGATGCTCCTGTGAGCAGGGCTACGAAGTCACCCCAGACGAGAAGGGCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021957:ENSBTAT00000029274:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGCCGTCACCCTGGC
R:
CTTGGCAGCCCTTCTCGTCT
Band lengths:
235-1323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development