MmuINT0093695 @ mm10
Intron Retention
Gene
ENSMUSG00000002020 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:MGI Symbol;Acc:MGI:99502]
Coordinates
chr12:84793944-84795160:-
Coord C1 exon
chr12:84795041-84795160
Coord A exon
chr12:84794067-84795040
Coord C2 exon
chr12:84793944-84794066
Length
974 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
CTCTTGGACTTTATCCACAGATG
3' ss Score
8.98
Exon sequences
Seq C1 exon
ATATCAACGAATGCCGTCACCCTGGTACCTGCCCTGATGGGAGATGCGTCAACTCCCCTGGCTCCTACACTTGTCTGGCCTGTGAGGAGGGCTATGTAGGCCAGAGTGGGAGCTGTGTAG
Seq A exon
GTAAGGGCTGATTGCCCAGGCACTGAGTGGGGGTCATTTGACCTTGGGATGGCTGGTTGACCCCACACACAGGGAGGGGAAGAGGTGGGCAGACAGAAGTGGCTTAAGGGGCATTGCCCTCCTTCATCCGGCTGGATTCTTAGACGATGCTGAGCATGATGTGGGTGTGCTTTGGTTATGGGACTCTGCCCTCTGAATCAGCTAGGGTGGGGCCCTCCTCTGCTGCCTAGCCACATCCGTTCCGAAGCTCTATCCTAAAGTCCCAGAAGCTCCTGCGGTTGGCTTCTGTTGACAGGGATGAGAAGCCGCAGGTTCTTAGGCTGAAGAGATCCAGCCACCAGGCTCCCTGCTACACTAAAGTACTGTATGAGGAGCGTCTCCCACTGAATAGTCGTGGCACTTCTTGTTCCCAAAACAAGTCCGTGACAGTGGAAAGGAGTGCTCTTTCCCCTCAGCCCCCGCAGGGAAAAGGCCCAAGGTTCTGATTCTAGGAGGAGCCATGTTTTGAATAGATGCTTTGAGGCTCTGGGGAGGGCAGATGGTTCCCAGGCCCTCAAGACAGCCACAACCACCCAGGAACAGCCTGGCCTTTCTCCACACTGCCCGCCCACACACTGGAACTGCTCGTTGAGTATGGACTATGTGTGTTTGGGTGGCAGGTAAGAGACTAGAGAGGATGAGACTCGAGATGGAATTAGTCAGGGGTCTTAGACACCTCATTTCTAGCATTCTCAGTAGGTTCATTTACCAGGACTATGTAGGGTGGCTGAGGAACACTCAGGAGGGTATGGCCCTGCTGTGCCTAGATGAAACCAAGGAGTATGGCTTCGTGGCTCTCCAAGAGTGGCTGGCCTACATTCCCTCTGACAGCCAGTTCCATGGGCTCATAATAGAGAAGATCTAGGCTTGCTGCAGTGGGAAGAAGGGCAAGGAGGAGCGAGAGGCCTGTGCACCCTCTTGGACTTTATCCACAG
Seq C2 exon
ATGTCAATGAGTGTCTGACCCCTGGGATATGTACCCATGGAAGGTGCATCAACATGGAAGGCTCCTTTAGATGCTCCTGTGAGCCGGGCTATGAGGTCACCCCAGACAAGAAGGGCTGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002020:ENSMUST00000002073:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF062476=Plasmod_Pvs28=FE(32.0=100),PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF062476=Plasmod_Pvs28=PD(6.4=19.0),PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGCCGTCACCCTGGTAC
R:
CGGCAGCCCTTCTTGTCTG
Band lengths:
233-1207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types