BtaINT0087932 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006747 | LTBP3
Description
latent transforming growth factor beta binding protein 3 [Source:HGNC Symbol;Acc:HGNC:6716]
Coordinates
chr29:44394984-44395418:-
Coord C1 exon
chr29:44395260-44395418
Coord A exon
chr29:44395170-44395259
Coord C2 exon
chr29:44394984-44395169
Length
90 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
GCCTCTTGCTCTGGCCACAGCTG
3' ss Score
7.8
Exon sequences
Seq C1 exon
CGGACAAGCCGGAGGAGAAGAGCCTGTGTTTCCGCCTGGTGAGCCCTGAACACCAGTGCCAGCACCCCCTGACCACACGCCTCACCCGCCAACTCTGCTGCTGCAGTGTCGGCAAGGCCTGGGGTGCCAGGTGCCAGCGCTGCCCAGCTGATGGCACTG
Seq A exon
GTGAGCCAGGGGCCTTTGAGGCTGGGGGGCTGTCTGTGAGCCTGCTTCTCCAGGAAGGGCTCACTTGCCTGCCTCTTGCTCTGGCCACAG
Seq C2 exon
CTGCCTTCAAGGAGATCTGCCCAGCTGGGAAGGGGTACCACATCCTCACCTCCCACCAGACGCTCACCATTCAGGGCGAAAGTGACTTTTCCCTTTTCCTGCACCCCGATGGGCCACCCAAGCCCCAGCAGCTGCCCGAGAGCCCCAGCCGGGCACCACCACCTGAGGACACAGAGGAAGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006747:ENSBTAT00000008880:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.619
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(85.7=66.7)
A:
NA
C2:
PF0068312=TB=PD(11.9=7.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGAGCCTGTGTTTCCG
R:
AGCTGGGCAGATCTCCTTGAA
Band lengths:
172-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]