HsaINT0097594 @ hg38
Intron Retention
Gene
ENSG00000168056 | LTBP3
Description
latent transforming growth factor beta binding protein 3 [Source:HGNC Symbol;Acc:HGNC:6716]
Coordinates
chr11:65551972-65552406:-
Coord C1 exon
chr11:65552248-65552406
Coord A exon
chr11:65552158-65552247
Coord C2 exon
chr11:65551972-65552157
Length
90 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
GTCTGCTGTCTTGACTGCAGCTG
3' ss Score
7.97
Exon sequences
Seq C1 exon
CAGACAAACCGGAGGAGAAGAGCCTGTGTTTCCGCCTGGTGAGCCCTGAGCACCAGTGCCAGCACCCACTGACCACCCGCCTGACCCGCCAGCTCTGCTGCTGCAGTGTCGGCAAGGCCTGGGGCGCGCGGTGTCAGCGCTGCCCAACAGATGGCACCG
Seq A exon
GTGAGTCAGGGTTACCCGGGGATAGGGGTTCATAGGTCCATGCACCTGTCCAGGAAATGCTCACTTTTGTGTCTGCTGTCTTGACTGCAG
Seq C2 exon
CTGCGTTCAAGGAGATCTGCCCAGCTGGGAAGGGATACCACATTCTCACCTCCCACCAGACGCTCACCATTCAGGGCGAGAGTGACTTTTCCCTTTTCCTGCACCCTGACGGGCCACCCAAGCCCCAGCAGCTTCCGGAGAGCCCTAGCCAGGCTCCACCACCTGAGGACACAGAGGAAGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168056:ENST00000301873:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.609
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(85.7=66.7)
A:
NA
C2:
PF0068312=TB=PD(11.9=7.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGAGCCTGTGTTTCCG
R:
GCTGGGCAGATCTCCTTGAAC
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development