BtaINT0087936 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004757 | LTBP4
Description
latent transforming growth factor beta binding protein 4 [Source:HGNC Symbol;Acc:HGNC:6717]
Coordinates
chr18:50182903-50184421:+
Coord C1 exon
chr18:50182903-50183067
Coord A exon
chr18:50183068-50184253
Coord C2 exon
chr18:50184254-50184421
Length
1186 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCTCCCTTTCCTGTTACCAGAGG
3' ss Score
8.4
Exon sequences
Seq C1 exon
CCCAACACGTGATCTCAGAGGCCAAGGGGCCGTGCTTCCGCGTGCTTCGAGATGGCGGCTGCTCACTGCCCATTCTACGCAACATCACCAAACAGATCTGCTGCTGCAGCCGTGTGGGCAAAGCCTGGGGCCGGGGTTGCCAGCTTTGCCCACCCTTCGGTTCAG
Seq A exon
GTGAGTGCCTCCTGCCTGTCTTTCTCGAGCATTTTTTTTTTTTTTTTGCTTTCGTTTTCTCTGTTCGACTCTTTGCAACCCCTTGGATTGTAGCCCGCCAGGCTTCTCTTTTCGTGGAATTTCCCAGGCAAGAATACTGGAGTGGATTGCCATTTCCTACTCCAGGGGCTTTTCCCGACCCAGGGATCGAACTCGGGTCTCTTGTATCTCCTTCATTGGTAAAGTGGATTCTTTACCACTTTGGCCACCTTGGAAGCCTGCCTTTCTTTCAATTCAGTTCAGTTCATTTCAGTTCAGTCGATCAGTCGTGTCCGACTCTTTGCGACCCCATGGACTGCAGCACACCAGGCCTCCCTGTCCATCACCAACTCCCGAAGTTTACTCAAACTCATGTTCATTGAGTCGGTGATGCCATCCAACCATCTCGTCCTCTGTCTTCCCCTTCTCCTCCCGCCTTCAATCTTTCCTGCCTTTCTTCAGAGTTGACGCAAATAGGCCTTCTAGGCTCCGCCCCCAGACTCTCCAATCAAGTTAGACCCTAGTCTTGGCCACACCCCCGGCCTTTGAGACAACCTATCATCAGACTGGACTCCGCCTGGGCCCCCACCCCACCTTGGGCCACAACGACACCTGAGGCCCGCGACCTTGAAGTTAGGCTGTGTCCCACGAGCGTCACCCCCAGCCTCAACCTCTCATAGCCCTTGAGATAGACTGCTTGCCCAACTTTGTCTCGAGGCTTGGCCAAGTACCCAGCTTCTGAGACACTGCCTCCTATCTAACTTCAGCTTTGGGCCCTGCCCAAGACACACTCCTCTCCGAGACACCTCCCTGGCAATCTTTTTCTGCATAAAACCAGATCCCACAATGGACCTGATTGGTTCCTGGCCTGTCCCTGTAGACACCAAACCAGACCCTGCCTTCAACTCCTGTCCCTGCCATCATCCCAAAGAGGGAAAAACATCCTTGGTCCCACCCTTAGCCTCTGAGATATCCCATTCTTTGCCAGGGTACCACCCCATCTCAGCATCCAAACCAAACCCCTAACACACCCCCAGGCCAAGCCTTCCCCACGATCAAGTCCAGACCCTCAACTCCCTCTTCTCTTTCTCTTTCACCACCCTTCCCTCTCATTCCCCCTACTCTCTTGCCCTTTCTCTGCCCATCTTTCTCCCTTTCCTGTTACCAG
Seq C2 exon
AGGGTTTTCGGGAGATCTGCCCAGCCGGCCCTGGCTACCATTACTCGGCCTCCGACCTCCGCTACAACACCAGACCCCTAGGCCAGGAACCACCCCGAGTGTCCCTCAGCCAGCCCCGTGCCCCACCTTCCACCTCTCGACCACCCTCAGGTGAGCTGGTTTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004757:ENSBTAT00000065855:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.642
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(86.0=66.1)
A:
NA
C2:
PF0068312=TB=PD(11.6=9.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACACGTGATCTCAGAGGCC
R:
TCCAGAAACCAGCTCACCTGA
Band lengths:
330-1516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development