DreINT0013915 @ danRer10
Intron Retention
Gene
ENSDARG00000099137 | LTBP4
Description
latent transforming growth factor beta binding protein 4 [Source:HGNC Symbol;Acc:HGNC:6717]
Coordinates
chr18:49040362-49044965:-
Coord C1 exon
chr18:49044801-49044965
Coord A exon
chr18:49040436-49044800
Coord C2 exon
chr18:49040362-49040435
Length
4365 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCTTATCTTTATGTTCACAGCTG
3' ss Score
8.57
Exon sequences
Seq C1 exon
CGCAGAAGGTGATCTCGGAGGAGAAGGACCAGTGTTTTCGGATCCTGAATCAGGGCGCCTGTTCTCTGCCCATCCTGAGAAACATCACCAAGCAGATCTGCTGCTGCAGTCGGGTGGGAAAAGCCTGGGGGAAAAAGTGCGAGTTATGCCCGTTCTTCGGCTCAG
Seq A exon
GTGAGACACTTGGACACTGTAATGACAGTGCATACATGAAGATAAAATCCCAAATGCAGCTTTATTAAGAGTGCTTAATACAGGGACAGATGGTAACCTGCTGATCATCCAAAAGAGTAGTCAGTGTAACATGCGAAAGGTCAAGACAGGAAGCAAAACAAACATAAACATATAAACAAAACAAAGAGTCAAAACTAGGGAAGGCTGATTTAAAACGTTTGACACAATGTCGAGATCCTGAACAGCAGATGTTTCAAAACGCTGCTCTGAAACGTTTCGAAACACCCAGGTCACGTGATTAAAGTGATTCAAAGGATCACAAGCAGTCCGAGACCTGGCAAATCTGCATTTGATTGACAGGGTCGGCAACAAAATTACAATCTCGAATACATATTCATGCCAGTCACGAGCACTAACCACTCACTAAATCACTTGATGTCTTGTCAAAACAATGTGCGTTTTTTTTCCTTAATTTGCATGACTGTTTCCTTTGTTAGAGTTGTTTAAGAGCAATACTTTAAAAAATTACCACTAGGTGTCACTGTAGAGACGGGTTTTGTAATGTTTGAAGCCTCGACATATTTGCTTTAACTGTTTAAGTGTTTCATGAAGCCTTGCTTTGTTAAGGCAGTTGTTAAGGCAGAAAATGTTAAGGCAGGCTGCAAAACAAACATAAACATATAAACAAAACAAAGAGTGAGAACTAGGAATGGCTGACATGAATCTAACATTTCGACACGGTGTCTTGATCCAAACGTTTCGAAAGATGTTTCGAAACGCTGCTCTGAAACGTTTCGAAAAACACCCAGGTCACGTGACGAAAGCGATTCAAAGGATCAAAAACAGTCCAAGACCTGCCGAATCTGCATTTGATTGACATGGTCGACAACAAAACCACAATCTGCTGTAGTCCAGTGGACCGTCTGTGGACATAATTCCTCAATTTGCGTCACTGTTTCTTTCCTGAAGCTGTTCCAGAGCAATACATAAAAAATTACCACTACATGTAACTCTGGAGACAGGTTTCGAAACGTTTCGAAGCCTCGACATATTTGCTTCAAATCTTTCAGTGTTTCATGAGGCTTTGCTCTGCCCATCACTAGATGTAACAGGCTAAAGGTCGAGGCAGGCAGCAAAACAAACATAAACATATAAACAAAACAAAGAGTCAGAGCTAGGGATGGCTGACACAAATCTAACATTTCGACAAGGTGTATTGATCCAAATGCAGATGTTTCGAAACGCTGCTCTGAAACATTTCAAAACACGCAGGTCACATGACTAAAGCGATTCAAAGGATCACAAGCAGTCCAAGACCTGGGGAATCTACATTTGATTGACATGGTCGGCGACAAAACTACTATCTCCTGTAGTCTAGAGGACCATCTTGTGGACATAATTCCTCAATTTGCATCACTGTTTCTTTCCTAAAGCTGTTCCAGAGAAATACATAAAAAATTACCTCTAGGTGTCACTGTAGAGATGGATTCTGAAACGTTTTGAACCCTTGATATATTTGCTTCAACTGTTTCAGTGTTTCATAAAGCCTTGCTCTGCCCACCACTAGGTGTAACAGGCAAAACGTTAAGGCAGGCTGCAAAACAAACCTAAACACATAAACAAAACAAAGAGTCAGAACTAGGGATGGCTGACACGAATTTAACATTTCGACACGGTGTCTCCATCCCGCACCGCAGATGTTTCGCAATGCTGCTCTGAAACATTTCAAAACACGCAGGTCACATGACTAAAGCGATGCAAAAGATCACAAGCAGTCCGAGACCTGGCGAATATGCATTTGATTGACATGGTCGGCGACAAAACTACTATCTCCTGTAGTCTAGAGGACCATCTTGTGGACATACTTCCTCAATTTACGTAACTGTTTCTTTCCTGAAGCTGTTCCAGAGCAATACATATAAATGACCACTAGGTGTCACTGTAGAGACGGATTCAGAAACGTTTCGAAGCCTTGATATATTTGCTTCAACTGTTTCATTGTTTCATGAAGCCTTGCTCAGCCCACCAGTAGATGTAATAGGGAAAACATTGAGGCAGGCAGCAAAACAAACATAAAAATATAAACAAAACAAAGGGTTAAAACACGACTAGGCAAGACAATGAAAATGCTTGGTAATACACACTAGACAGATATACAAGACTGAGCCGAGATTGTGTGTGAATGTGGTGCTTATATAGTGTGTGTAATCAGTGTAAACGATCTGCAGACGTGTGTGTAATCAAAAAAGATGAACATCAGGTGTGATGTGCTGTGAATTATGGGACGTGTAATCCGGTTGAGTGGCAGATGTGATGTGTAGAGTTTTTAAAGCATGCACACTTAGATGAACATCTTTAAGGCAGACGTTTGGGGCGAGAGATGTTGGCGCACAATATTGAAACATGATTTGGATTTTTTTGCTCAAAGCGTCCAACTGTTCCTCAAGATGCCGTCCCACCCACACCAGCAGCAATATTTCTTTGAAAACGTCTGGAGGAATATCAAAGGAGCTGGGATTTACTGTGTAATTTGTCTGCCTTCGTTTTAAATACCGCAAGTTCTAGCATCGCCCCAGTTGACCCTCTTTCATTTCTGGCTCAGCTGAGAAACACTTGTACTTTTATAGGGTTTTAAGATCTTCAGAACTGTGTTTTGTGTTTGTTTAAAGAGATAGTTCACACAAAACCATAGAAATAATGTCCTCATTTATTCACTTATTCCAAATCTGAGCTTCTTTCTTCTGCTGAACACTTCTGTTTTGAAGTAAGCTGTAAATCTGTAACCATTGACTTCCATTGTATTTGTTTTTCCAACTATGGAAGTCAGTAGTTAGATGGGTTTCAGCATTCTTCAAAATATCTTCCTTTGTGTTCAATAGAAGAAAGTAAGTTTGGAACAACTTGAAGCTGAGTAAATATTGGGTACATTTTCCCTAACTCTAGAAAATCAAGCTGTAGAATGGCCCAGCCAATCACCTGATCCGAATCCAATAGCTAATACAAAATGAAGCTCAGATTTAATAGATGAGACCTACAGAACCTTTGAGATTTTCACCTCTTGTTGAAGTGTTTTTGAAAGTTCTGAAGAGCTTTTCCCCCACTGAACACAATATATTTTATTTGAAGAAACATTTATTGGTAAATAGAAACATAATTTGGGACAGAAGCTTTTGATGTGGAGGGTTATTTTGTGCTGGAGGTACTGTAGCCCTAAAAACATTAAATTAAATAGTTAAAAAAAATAAAATAAAATAAATTAGTTAAAACAAGTGATGTCAAAATTAACGCATTCGCGTTGTTGTGTTAGAATCCTTGTGAAATACAGTAATACTTTAGGACGCTTAGTTTAAGCAAATTTGATGAACGTGATCATGCGTGTTGAATCTGAGGGGAGTCGCTCCAGTATGGAAGGCCGTTGGGGCCAAAACGTCTGCAGCACGTTGTGTGTGTGTCTGTCTGTGTGTGTGTCTGTGTCAGGCCTGTTGAGGGGTGTCAGGGGTGGAGTGAGCGACGTATCTGAGTAGGGGCGAGAGGGGTGTGCAATGTATTTAACGACTGGTTTGCAAGAAATTATCATTCATTTGCGGGCATTTGGGAGTCTCTGTGCACTTGCGGGATACTCCTAGTCTTAGCAACTGGATGAATGTAAAGGAGGATTAAGCAAAATGGTTTCTACTCTATAACTAATGTTCTCAACTCACAGCAATAAAACTTTACAATGAGTGCAACAGTTTGTATTCTATAGTTTATTATTATAATTTTTCATTTTCCATATCTGCAATTCCTGTATTTTGGCATTTTTTTGCAGTCCACTTAGAATCCAACATGGAAATCAATGTTTTCTTTATTGCATTGATTGTTTTAAAATTTAAATGTCATTAACATGCCTGTGTTTTAATTTCTGTAATAAATATGGCTGTCAAGCAGGATCTTGATGGTTTATTGTGGGTATGTTGTTTACATGAAGAAATCTGTGTTACAAGTTAAACAAAAATTCTATTAAACAATAATATTTTGAATTTAAATGTTTTTTGTCTTGCGTTTACATTAATTTTACTTTTAAATAGCCAAAATTACAAGTTTCAGTATTTTAAATGTGATTAATCGTGATTAGTTTTTAAAAAAAAAGTGTGATTAATTAGTAAATTTTTTTAAATAGATTGACAGCACTAGTTAAAACATACATACTGTATACTGTAGGGAATGTATAAGAGAAAGATTAGCCTTTTTAATACCTTGACTTTTTCAATCTGCAGTACTCCTTGAAACCGGTTATCATCCCTTGCCTACGTCAAGGGATCTTTAAGAAACAAAAAATGTGAATTTCCCAGATTTTCAATCAGTTTCTTATCTTTATGTTCACAG
Seq C2 exon
CTGCCTTCAAGGAGATCTGTCCTGCCGGACCGGGCTACCATTATTCAGCTTCGGCGGTCAAGATTAACCAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099137:ENSDART00000160702:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(86.0=66.1)
A:
NA
C2:
PF0068312=TB=PD(11.6=20.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]