BtaINT0089087 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001609 | MAP2K6
Description
Bos taurus mitogen-activated protein kinase kinase 6 (MAP2K6), mRNA. [Source:RefSeq mRNA;Acc:NM_001034045]
Coordinates
chr19:61732013-61733174:-
Coord C1 exon
chr19:61733126-61733174
Coord A exon
chr19:61732127-61733125
Coord C2 exon
chr19:61732013-61732126
Length
999 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTCGCTTTTGTCTCCTGCAGAAC
3' ss Score
12.24
Exon sequences
Seq C1 exon
GCCGCCGCGGGATTTAGACTCCAAAGCTTGCATTTCTATTGGAAATCAG
Seq A exon
GTGAGAAAAGTCGTGTCTGCCTGTTAACGTCCTGACCCTTTCATATGTCTGCTTTGCCACCGGCCAGTGGGAAAAAATGAATTTTCCGTAACATGCTGTCAGGGGTTGTTGGGTCAATAACGTCTGAACGTAAACAGAAGTGGTCTGTGGAGCAGTTGCTGTTTTAAATGTCAAATTGGGATCGGGCTGTTGTGGTTCTGATGGGAGGTCTCCGAGGCGAAGAGATGGTTTGTTTTGGGCCACGCTCTGCCAAGTCCAGGCCTAGAGCTAGCCGCCAGGAGTCAGCAGGCGGACCTGAGGGTCATCGAGGGGCGGAGCTGAAGACCCGCTGTGTGGGGCAGCGCTCCCTGCGCCGTTCGGCGCCTGAGCTGGAACTGGACCTCTGTATTGCCCGGGACAAAGGGGGGCCCACAGTGGGCGTCTGCACATCTCCCGGGCACTTCTTGCTTTCAGTGGCTGCTGGGCAAAGCTTCTAGACCAGAAGGTTCTGGACCAGAAAGGACCCTTGGACTGCTCAGAGGAACCAGAGGGAGGACAGGGTAGCCTGTGTCTGGTTTCTTTCCTTTTTTCCTATTGCTGAGCGCTAAAGAATGGATGCTTCTGAACCATGGTGCTGGAGAAGACTCTTGAGAGTCCCTGGGACTGCAAGCAGATCCAGCCAGTCCATCCTAAAGGCGATCAGTCCTGAATGTTCATTGGCAGGACTGATGTTGAAGCTGAAGCTCCAATACTTTGGCCACCTCATGCGAAGAGTTGACTCATTGGAAAAGACCCTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGACAACAGAGGATGAGATGGTTGGATGGCATCACCAACTCGATGGACATGAGTTTGAGTGAACTCCGGGAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGTGGTCCACGGGGTCGCAGAGCCGGACGCGACTGAGCAACTGCACTGAGCTGAACTTCCTATCGCACCCTCGCTTTTGTCTCCTGCAG
Seq C2 exon
AACTTTGAGGTGAAGGCGGATGACCTGGAGCCCATCGTGGAGCTGGGCCGGGGGGCGTACGGGGTGGTGGAGAAGATGCGGCACGTGCCCAGCGAGCAGATCATGGCGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001609:ENSBTAT00000002115:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.591 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(11.1=76.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]