GgaINT0126845 @ galGal4
Intron Retention
Gene
ENSGALG00000004370 | MAP2K6
Description
mitogen-activated protein kinase kinase 6 [Source:HGNC Symbol;Acc:HGNC:6846]
Coordinates
chr18:8280483-8282722:+
Coord C1 exon
chr18:8280483-8280531
Coord A exon
chr18:8280532-8282608
Coord C2 exon
chr18:8282609-8282722
Length
2077 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TGATGGCTTTCTCCCCGCAGAAC
3' ss Score
11.84
Exon sequences
Seq C1 exon
GCCACCCAGGGATCTAGACTCCAAAGCCTGCATCTCTATTGGAGAGGAG
Seq A exon
GTAAGCATGGGGGTTATGGTGAGGAGGAGACCTTTGGGGACAGGTGACTCCCCTGCTCCAGGCAGGCTGCTGTTGGCATTGCTTCCTCCTTAACTGCAGCCAAAATAGGGCAGGTTGGCACGCACCAGCTATTTAAACGTGCAACCCTGGGGCAGCTGCAGAGTGCCCTGCCAGTGGTCCTGGCTACTGACCATACTCCAAGTGCTCACCCATCACTCCTGGGTCCCATTTGTGTTTTCCACCTCGGAAATTCCTGCCTTGACCTGGATAAGGTGCAGCTAATCCCCTGGAAATATCCATTACAATCCAAGGGGCTGCTAGCTGCAGATTTTACTCTCCTTTGCATCTGCTTTGCTGATTTAAAGCCTTCATCCAAAGAATTTCCCTTTGCTAATACTAGAGGCCTTCTCCTCGAGAGTCTTAACTTAGGGTAGATCTTCCTGTCCTGGAAGCGAATCCTTCTGACAGCATGGAAACCCGTCCACATGATGCTATAAAAACACAGCAGGGAAAAAAAAAAACCCACCCAAAACCAAGGACAGCTACTTTGATAGGAGAAAATGGCCCAGCAGCATTCAGCAAAACGCTTTAAAGCTGGGCAATAAATTTATTAGGTGCAAAAGATAGGCCTCAGTGTCAGCGAGTGAATTTATGAAGTGAAATGCTACTGCAGTGGTGTTTTCTGTCGTCTATCTTTGGATGCTTTTCTTTCGTTTTGGATCTGGTATTTTCCCTGGCATGGGGAGGAGCTGGGAGGTGGACATGAGTGTGAGATGCCTCTGGAGCTGGAGCTCCATGAAGATCCCTGCTCCCTGCAGTCCCAGAGAAGGGGAACATCCATCCCAGCACTCCCTGTGCTCTGTGCACAGAGGGAGAGGGGCAGTCTTCTAAAACACAACACTTGGGCTTTCTTATGGGTGCAGATGTGTGGCTATCTCAGAGAGGCCAATGTGCCATGGCTTGAATTTCCATGGACCCATCACTTATTTGTCCAGCCGGTTCCTTTAGGATGCGCTCCCCTGTTCTGACACTCACCCCAATCCCTGGAGAAATCCACTTTCCCCTTTCTCCCTTTAAACTTCCCTGCTAATTTGAAGAGCTTGGAGCACGTCGAAGTGCTTTCCTGGAGAGGGTCCCGTGGAACAGTAGCAGCAGTGTCAGGCAGTCAGCGATGCTTAAATCATGCAGAAACGTTGAGGAGGGCTCCTTGTGCAGGGGATGGAGCCTGAGCACAGTAACACAGTGTATGGGCCCGTGCAGGCACGGGTCGGGCTGCAGGATTTTTCTGCTGCGCAGGCAAAAAGCAGTGTGGGATTATGTGCTGTGAATCAGTTCATTATAACCCGCTTCTTTCTGTAGGATGATTGACTGATGTGGTGGTGCGTTCAGCAAACAGAATGGCTGGTTTTAGTAGCGAGAGCATATTTTAAAGATCCAAAAATAATAGTAGGCAAAAAATATACATATATATAAAAAACAAGAAATAGGGCTGCTGCACAATATCGCAGCAGAAGGGAGAAGGGCAGGTTAAAATGCAAGGCTCCAAACAAAGTCATCCTTTGTGTAAGGCCAGCAGAAGGAGACCTCCAAGGCTAGACAAAATAAATCCTTTGTGGTTTACAATCAGGGCACACTTGGCTAGTGTTTAGGCCATCTGCAGGTCTGGAGAAATAAGCCTTGAAACAAATCGGAGATGCTTCTGTGGTGGTTTGGGGGAGGAGGAGGAGGAGGAGGGAGGAAGTTTATGGGAAAACTGAAGGTGATTCCTGGGGGAGAGGCTGCTGTGGGGTTTTCCATCCCATGTCCTTAAGGATGGAGAGGCTGCAGGTGAGGGGTGGGAGGATGCAGGTGGCATCCCACCAAGGAGCGCTCCTTCCTGCGTCCACCCCAGAGCTCTGCTAATTACTGTGAAGTAGTTAATCCTCCATACAGCTGCTGGGGGACATTGTTTTGTTCATTGCCTCACGGAGCAGATGGGGGGGTACCCAACTGAGATGAATTTAGGTGCTCAGGGTTAGGCTGTAGGGGAATGATGCTCCTCGCAGCCGCCTTCTTGCTGATGGCTTTCTCCCCGCAG
Seq C2 exon
AACTTTGAGGTGAAAGCCGATGACCTGGAGCCCATCTCGGAGCTGGGACGAGGTGCATATGGGGTGGTGGAGAAGATGCGGCACATGCCTAGCGGGCAGATCATGGCAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004370:ENSGALT00000006971:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(11.1=76.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]