BtaINT0089967 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018473 | MARCO
Description
macrophage receptor with collagenous structure [Source:HGNC Symbol;Acc:HGNC:6895]
Coordinates
chr2:71117225-71118662:+
Coord C1 exon
chr2:71117225-71117314
Coord A exon
chr2:71117315-71118525
Coord C2 exon
chr2:71118526-71118662
Length
1211 bp
Sequences
Splice sites
5' ss Seq
TGGGTGTGT
5' ss Score
3.3
3' ss Seq
GGGGAAGAATCTCCTGCCATGTA
3' ss Score
-7.22
Exon sequences
Seq C1 exon
GCTACATTCTGAATTCCTTTTCCTTTCCAGGACCTCCAGGACCCCGAGGCCCACCAGGAATCAAGGGAGAGGCAGGTGAGCAGGGGCTGG
Seq A exon
GTGTGTGTGCCAGCCAGGCAGCAGCCTGTCTCGGAGCAGCTGCCACACACACACCCCACCCTGAAAGTCTGAACTCCGAGTGGGGTCTGTGTGTGAGGGAGGTCACCTGGGGTGAGACCCTACATGTCCTGGGATGCTGGGAAGTACCTGCTTCACGGAGGAGACACCTAGGTGTCGATGGAAGGGTGAGGACACTGCGAGACTTGGTGCTCAGAGTACAAGCCTATGAGCATCCCTGGAGACAGTCAGGCTCATTGGTCCAGACTCCAGAGTCTGACACAATTGCCTTCACCATAGACTGGTTGCACGACCTGGGGAGCACCCCTTTACCTCTCTGGGTCTCAGTTTCTGTGTCTGTAAAATGGGGATAAGAATGCTTCAGACGATTACTGGGAAGTTAAAATTATAATTCAAAGCCCATGATTGGCTCTGTGTTTTAGGCTGTGGCTTTAATATGCTCAGGTGCCTTACCAATGGCCACGGCAAGGCTCGGATGTGGGGGCTTGGATGGCCCCTGGGGGAGAGGGGCTTCATCACTGTTACAGTCCACTCTGACCTTCACTTAGACTCTCAAACCTCCAATCCCCAGAGGGGTGGAGGCTGCTGAGTTGTAAAGATGTCAAGAAAGCTGTTACTAAAGAAAGAGCAGAATGAGAGGATTTGCAAGAAAAGGGGAAATAGACTGAGAGCCTCTAAGTCTCCAGGACACCGAGACAGAAAGAAAAACACCACTAGTTGCAGAAGGGAAACTTGTTAGGAGGGAAAACTTTTTTTTTCCAGGAACTAATTTTTGGAAGGATTTTAATAGAAGGGGAAATCCCAGCAGGCCTAGTGTTCTAAGTCTCCAGCAGGGTTTTCCTGAGGAAGGTTTTCAGAATGGAGGATGGGCAAACAGTAGAAGGAGAGTTCAGGGACCCACCCAGGCACACAATCACACATGCACGGTCACACTAGGGCACCTGCTCACACGTGCACATCACTCACATGCATACACGCCCACACACTCACTCACATGCACTCACCACCCCTACCACAAACTCATACACACTCACTCACTCAGCCTTCAGGGCCAGGGAGGGGCAAGGTCACCCAGAGGGTGGTGGGTAGCCAAGCATCCCAGGGGCACAGTGGTGGTCACTTCTGTCCAGGCGAGCAAAGGACAGGATGGGAAAGCTGCGAACAGAGTGAGAGGGGGAAGAATCTCCTGCCAT
Seq C2 exon
GTATAACTGGTGGCAAGGGCAGGCCTGGCAGTGCTGGGAACTCAGGAAAGAAAAAGGTGGGAGATCCAAGTGGGGCCCGAGGTGGGCCTGGGTCAGGAGGGGAGACCGCTGGTAGTGAGGACAAAGGGGCTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018473:ENSBTAT00000024586:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.903 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACATTCTGAATTCCTTTTCCT
R:
ATCAGCCCCTTTGTCCTCACT
Band lengths:
224-1435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]