HsaINT0099945 @ hg38
Intron Retention
Gene
ENSG00000019169 | MARCO
Description
macrophage receptor with collagenous structure [Source:HGNC Symbol;Acc:HGNC:6895]
Coordinates
chr2:118974521-118977515:+
Coord C1 exon
chr2:118974521-118974565
Coord A exon
chr2:118974566-118977470
Coord C2 exon
chr2:118977471-118977515
Length
2905 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TCTTTTTTCCTTCCTCACAGGCC
3' ss Score
12.65
Exon sequences
Seq C1 exon
GCCCCTCGGGACCCCAAGGCCCACCGGGAGTCAAGGGAGAGGCGG
Seq A exon
GTGAGTAGGTGCTGGGTATGTACCCAGAAATACACAGCAAGTTTCTCAGAGTGACTGCTGTGGGCTGCAGACGCAGCCTCCCTCCAGAGTCTGGACCTCTGAGGGGTCTGTAGGTGAACGGAGGCCTGGTGGGAGACCCCAGAGGGGATGAGAGGCTGGGAAGCACCCTTTCTGGTGGCCAGAGTAGGGCTGGGCAGCCGCCCTCAGGGGCAGGTATGGCTAGATGGCCTTCATCCTAGATGGGGCTGGGGGGTGTGACTCCTACCCCCTCCTCTGTGTGAGAATGTAAGTCTGCCAGTGCCACTTTGGAAAGTTGGCCTCCTTGGTCCAACAAGGACTCTGGTGTCAGGCACATGCACCTCCACCTTGGACTAGCTCTGTGCCCTTGGGAATGTTTCCTGATGTTCCCAAAGAAACCGAGCCTCAGTTTCTTTTTCTGTGATTGGGGATGAGAGGGCTGCAGAGGGCTGCCAGGGGGATTAGAGACAATGACACAAAGCTCATGATCGTTGCTTGGAAAGTATTAGTTTCCATTTTTTTAGACTGTTGCCTAATTCTGCCCAGCCATCTTATTAATATAAATGGGTTCACGGGGCCCGGTCAGAGAATGGGGGGCCCAGAGCTGTCCCTCCCCAGGGACAAACCCAAACATCAGTTTTCCATTCCACTCTGCTCCCATCCACCCTTAATTTAGAAACTCCAACTTGCAAATTCCGCAAGGGGTTGAGGCTGCTGGGATGTGAAGATGCGAAGACATTAAGACCTTTACTAGACAAAGGGCAGATGAGAGGATTTACAAGGGAGTGGGGAGTAAACAAAGCAGGTCTCTAAGCCGCCAGGCTGCTGAGGCAGAAAGAAAACACCACCAGTTACAAGAAAGGAAACTTGTTAGGAGGTAGAATCCTCCAGAAATTGATTTTGGGAAGGAATTTAATAGAAGGGACCCCAAAGAGCCTATTGATCTGTGTCCAGCAGGGGGTTTTCTGAGGAGGGTTTAAGCGGGGAGGATAGGCAGACCAGAAGAAGGAAGGTTTATGGTGCAGTCAGAGGTGTGCACATGCATTCACACCACACACACTCACACTCATGTCTGAGGGCACATCTGTGCACATACTTGCATTCTCACACTCACTCACGCACCAATGTAATCACACTCATGCACACACATGCACTCACATACACACATATACTCATGCACATATATGCACTCACATACACGCATATACTCATGCACACCCGTGTCTGAGCACACATCTATGTACATATTTGCATTCTTACACTTGCACAAGTACAATCACACTTGTGCACATATGCATATGCTCACACACATTTGCAGACATTCGCACCCCCCATGCACACACACTCACACTCAGCCTGTGGGGGCTTGAGCAGAGCAGGCTCACTCAGAGGGGAGTGGGTCTCCCTCCATCCTCTTTCCTCCGAGAGAGAGGGACTCAGGCTAGGTGACTGAAACTCACCAGAGTGGAGCCACTGAGGCTGGCTTGAAGGGAAAAGCCAGAAGCCTGAGGAGCACAGTCATTTCCTTCAAGAAGGAATAGAGCTGGAGCCTCCCCTTCTCTTTAGGACTCTGACAGGTAGGCACATCACACAGCCTTGACAGAGGGCTCAGAGCAGGACTGTGCAACCACTAGCACTAAAACCAGGCAACCCCTTTTTCAGCCCAAATCATCTGGAACCCACATACATGAAACAGATCCACAAAGTAGGCTGTTGTGGTTCCATAGAGAGTGTGGAGTCCAGAGCCCATCTGCACTTTCTGCTTGGGCCCCACTGGCATCCTCAGGAAAAGCTTGTGTAATTCAGCAACTCACTTAGAGCCTCTCTATATACACCCACCTCCTCTCACTCCTCTCCTTCCCATCCTTTTCCACTTTGCCTCCTGGATCCCTCAATTTCCCCTCATAGTCTCACCATTTCTCTCCTCAACAGATCCCTCCCTGCCCCTGCCCCTGCCCCAGGAACACCCAGCACCTCCAGTCTGTACTCCATATGCTAGCCTTGGATACCTGGGCCATGTGGGTGGGAATCACCGTTTCTCAATTCCAATTTTGTCTTAGAACACTAATTATGCATCTGCTGAGGACAGGTAGTCATTAGCAGCCCCATTTTACAGATGAGAAAATTCAGATGCAGAATACTTAAGTGACTTTTCCAAAGTTATCAGCCTGGGGAGTGACAGAGCTACAATTCAAACACACTTGCCTGACTCTAAAGCCTTTCCTGCACTGCCATGCAGGACATATTCCTAGGTGCTGTTCTGGACCTTTGGGAAGAGAGCTGTCTTAGCCTGTTTTGTGTCACTACTACAGAATACCTGAGACTGGGTAATTTACACAGAATAGAGGTTTACTTAGCTCATGATTCTGCAGGCTGGGAAGTTCAAGATTGGGCAGCTATCTCTGGCAGCTTCTGGTGAGGGCCTTGTGTTGAGTCAAAATGTGGTGGAGAAATGGAACTAGCTCTCTTGGTAACTAATCTAGTCTCACAAGAGCAGGAACTCACTCCATCTTGCCAGATGGGATTAATCTCTTCATAAGAGATCTGTCTTTGTGACCCAAACACCTCCCCACTAGGACCTGCTGCATTAAGGACCAGGCTTCCAATGCATGAACTTTTGAGGGACACTTTCATGCCATAGCAAGAGCAAACACTGCCTGGAACTGCCAGGGACTCTGCTGGTTGTGTTTGTGCAATCATATGTGTGTGATTGTGTGTGTGCATGTGTGTGAAAAAGAGAGAGAGAGAGAGAGTGAGAGTGAGAGAGAGAGAAAGATCTCCTTCTGGGAACCTTGCTCAACTAAGGGAATCTAGAATGTCAGCTGATTAAAGACATTTTAGACATTCTCAGGCCACAGCAACTGAGCTCTTTTTTCCTTCCTCACAG
Seq C2 exon
GCCTCCAAGGACCCCAGGGTGCTCCAGGGAAGCAAGGAGCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019169:ENST00000327097:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(21.5=87.5),PF0139113=Collagen=FE(18.8=100)
A:
NA
C2:
PF0139113=Collagen=FE(18.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development