RnoINT0089753 @ rn6
Intron Retention
Gene
ENSRNOG00000049303 | Marco
Description
macrophage receptor with collagenous structure [Source:RGD Symbol;Acc:1589662]
Coordinates
chr16:85129364-85132012:-
Coord C1 exon
chr16:85131968-85132012
Coord A exon
chr16:85129409-85131967
Coord C2 exon
chr16:85129364-85129408
Length
2559 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCCCGTTTCTCCTCACACAGGCC
3' ss Score
8.95
Exon sequences
Seq C1 exon
GTGTCCGAGGACCCCAGGGCCCACCAGGCACCAAGGGAGAGGCAG
Seq A exon
GTGAGTAGGTGTCACAGGAACACACAGTGGGCTTTCTCAGTGACAAGGACCCACACCAGAGACTAAACCCTGTGGGGTGGGCCTGCACAAGGGGAGGCAGCTTGTGTGAGACCTGGGGTGGGCTCAGAGGTGGGGGAGGGGGAGTCCACAAACGGTAGTATTGCTCAGTGCTGCCTCAGCCTGGACAGGTTATATAGGGTGTGGACATCACGGTTGAGCCTTCTCTGCTGAGGACTGCAAACCTATGAGCCCGCAGGGTACAGTGCAGCCCATGGCGGCTGAGTGGGTCATTGTGGCCTTGCCTCCCGCACCAGCATACACCTCAGTTTCTTTATACATAAAATGAAGCTGAGGCGTTTGCCGGGCATTGTTCATGTATATCTCTGTGTGTATGTGCACATGTGTGTTGTGTCCTAGCCCACATGTGCTCACATAGAAGCCAGAGTCAGCCTTGGTGGTCACTCCTCAAGTACTGTATATGTCCACCTTGGTTTCTGTCTTTGTATTCATTTTTAGTTTTGTCTTGTTTCATGATAAGGCTAGTTACACTGGCCTGTAACTTACCAAATAAACTAGGGTAGCTAGCCAGTGAGTCCCAGGAACCCACCTGCTGCCTCTGCCTCCTCCGTATGGAGACTACAAGCGCACACTGACACTCCGAGCCACTTTACATGGGTTTCGGAGGTTAAACTAAAGTCCTCCTGCTTGAAAAGTGAGCCCTCTCCCGAGAGAGCTATAGCTTCAGCCTCACCTGCCCAGCCTCAGCTTATGTCTTAGCCACAGACCAGTAGTAGAATCAGAATGCCCTCTTCCTCTCCCTCCCCGCCTCTCCTTCTCCCCCTCCCCCTCCCACGGCCCCCTCCCTGGAGACAAAAGCCTAGGAGAGTGACTGTCAGTCTTCACAGAGCGCCCCCAGTACCCCACTAAGACCTTTTAACAGCCAGAAGCAGAGCCAGCCAGTCTAGATAAAAAGGGGGAAGTAAACAAACCAGCAGGCTTGCCCCTCCAGAAAGCGCCAGCAGTCACAAAAGGGGTCTGGTGAGCAGAGAAAGCTACTTCTAGGAACTGGCTCTATTAGGAAGGTAAGCTAATAGGATCCCCAGGAACCCATTGTTCTCTGTCTAGGCAGGGCTTCTTCCAAAAGGCTTTAAAAATCAGAAAGGAAGATTTCAGTGCAGTGAGGAGCAGGCATAGACACTCATACACTCACCCATTGCACTACCACATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACATACTCACTTACAAGCACATGTCTACACACATCATTGTGTCTTCACACTCATATGCTACACACACACACACACACACACACACACACAAAATCCCGCATTCACTCATGCACACATATAAACACTGGTGCCTGCACATGCATGCATCCTTACACACACAGGGCCACACATTCATGCGCATGTACGGACACATGTGTATGAATACTTGCACAGTACATTCATGTACTTATGTGTATGTATGAACACACATTTTGGCACAGATACTAGCTCCCAATACACAATCATGGAAATACACACTCACATATTCATGCACATGTGTGAGCACACACTCTAGTGCTCACACTTATACATAGCATACACATACTCATGTGTGTGCACCTGCAGATACTCATGTGACCTACACACAAACAGCCTCACACCCACACTCACACTCACACCCACACTCACACAGCAGGCAGGCCACTCAGAGGGGATCCAGTCTCCCCTCTTGCAACTCAGAAAGAGAGGCTTCAAGTAGATTCCCCAGATCCCAGAGACAGCAGGCAACCAGGTCACCTGGAAGGACAGGCTCAGCCCATCCTAGAGGCACAGTCTGAGGTCCCATTCTCCTTGGGGAGGGCAAAGGGTCTGTGATGGAGACCACAAGCCCAGAGCAGCTGGCATCCTAGGAAAGGCTGGAGCCCAGGTGTCCCAGCAAACCTTTCTCCACACCTTGCCTGGCAGCCTCTCCTCCCCTTCTTCCTCACCCACCCTCTGGGATTTCCCCACTTCTCCTCATGCTCACTGTTCTGCCTTGTTCCTCCCCCACCCTGTCCCCTGGATATGGCCTGCCCTTCAGGGTGTAACTGCATGTTCTTCCAGTTGGCCTGGAGGGAGCCATTCTTTGCCAACTCCATTTATCTCCTGTCCTGGGTATAGGATTACTAATGAGGCACCTGCAGAGGGCCCAGCCATCATCAGCCCCATTTTACAGATGATAGCATTGTGGCAAGGGATACTGAGGTCTCTTTTCCAAGGCTCTACCATGCTTGGATAGGCAGCTATGATTCAAACCCACTTCCCTTGTTCTAGAGCCTTCTTCCACCGCTATGCACAGACCAAGCCTTCGGAAAAAGTCGCCTCTGTGTGGGCCTGCCTGGGACTCTACCCCATATGTTTGCTTGTGCATCTGTGTATAGGTTAGAGGGCTCTTATGACTGGGTACCTCAGGGCCCCAGAATGTCAGCTAACTAAAGAAACCAACTACAGTGACTGAGTCCCGTTTCTCCTCACACAG
Seq C2 exon
GCCTCCAGGGATTCACGGGTGCACCAGGGAAGCAAGGAGCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049303:ENSRNOT00000075773:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(24.6=100),PF0139113=Collagen=PU(16.9=75.0)
A:
NA
C2:
PF0139113=Collagen=PD(8.2=31.2),PF0139113=Collagen=FE(21.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]