BtaINT0090382 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010616 | MBD6
Description
methyl-CpG binding domain protein 6 [Source:HGNC Symbol;Acc:HGNC:20445]
Coordinates
chr5:56278110-56278615:-
Coord C1 exon
chr5:56278462-56278615
Coord A exon
chr5:56278280-56278461
Coord C2 exon
chr5:56278110-56278279
Length
182 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
ACTTTACAATTCCTTAACAGGTG
3' ss Score
9.21
Exon sequences
Seq C1 exon
CCCTGTGTCCTGAGCGCCCCCCAACCTGGACCACCTACCTCCAGTGTCACCACGGCAACTACTGACCCGGGGGCCTCCTCTCTGGGCAAGGCCCCCTCCAACTCAGGGAGACCCCCTCAACTCCTTAGCCCTCTGCTGAGTGCCAGCCTGCTGG
Seq A exon
GTGAGTCTGAGGGAAGACTCTGTGGTGTGGGAGAGAAGAAAAGAAACAGAAAAATTGGGAGTAGAGACTAGATGAATTAGGGAGGAAAGTCTGTGACCACTGAGTCAAGCCTAAAAGAATAGGGTCTGCTCAGCCTAATTGGTTTGCCCAGGGAGACCCTTGACTTTACAATTCCTTAACAG
Seq C2 exon
GTGACCTGTCTTCGCTGACCAGCAGCCCTGGAACCCTCCCCAGTCTGTTGCAGCCTCCTGGCCCTCTTCTCTCTGGCCAGTTGGGGCTGCAGCTCCTCCCTGGGGGGGGAGCTCCTCCACCCCTCTCAGAGGCTTCTAGTCCCCTAGCCTGCCTGCTACAGAGTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010616:ENSBTAT00000014034:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.942 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCACGGCAACTACTGAC
R:
GGGGACTAGAAGCCTCTGAGA
Band lengths:
253-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]