BtaINT0091482 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011556 | MED22
Description
Bos taurus mediator complex subunit 22 (MED22), mRNA. [Source:RefSeq mRNA;Acc:NM_001034742]
Coordinates
chr11:104310943-104311650:-
Coord C1 exon
chr11:104311594-104311650
Coord A exon
chr11:104311105-104311593
Coord C2 exon
chr11:104310943-104311104
Length
489 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCC
5' ss Score
7.84
3' ss Seq
ACACCCAGACTCGGTTCCAGGTG
3' ss Score
3.04
Exon sequences
Seq C1 exon
CCGCGGAGACTGACCCGCAGGGGCACGCGCTTGTTCCCCGACTCCGCCCCTAGCGAG
Seq A exon
GTACCCAGCGGGCCCTGGCTCTGCGGGCCCACTGAGGGAGCTGGGGCGTCGTGGCTCGGTCGGCGTCCTTCTGGTGGGGTTTACTCCCCCGCGAATTCGGTCGGGGGCCTCGCCGGGCGGGAGCGCGCGTAGCCCGGAGGAACCTGGCGCGGGGCGGGAGGGCGGGCGGTCCCGGGACTGAGGAGCCCCGACGCCTCCTGGGGCCGCCCTCTAGGGGCCCCGGCGTGGAGACGGGGGCGGCAGAGTCGGGATAGGACCCGAGCGGCTCGGCGGGGACGTGCGTGAGCCTGGCCTCCGAGAGGGCTGCGCCGGCGCCGGCCCGGTAGTCGTCGGGGTCCGGCCAAGGGGGCGCGGACCAGAGGAGAGCCCATAGCGCGTTTGGCAGAAAGGGCATCTCCGGAGAGCCTGCCCGAGGGTCCTACCCAGGCTGGCGCCTGCAGCGGGGAGAAAGGCCGGAGCTGGCCTGCTCACACCCAGACTCGGTTCCAG
Seq C2 exon
GTGTCCCGCTCCCCGTCCTGCGCTGCCTGAGGCCCCGCCATGGCCCAGCAGAGAGCCCTGCCGCAGAGCAAGGAGACGCTGCTGCAGTCTTACAACAAGCGGCTAAAGGACGATGTCAAGTCCATCATGGACAACTTCACTGAGATCATCAAGACCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011556:ENSBTAT00000015357:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.195
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF146811=UPRTase=PU(27.2=75.6),PF061797=Med22=PU(23.1=65.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTTGTTCCCCGACTC
R:
GGCGGTCTTGATGATCTCAGTG
Band lengths:
190-679
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development