HsaINT0101576 @ hg19
Intron Retention
Gene
ENSG00000148297 | MED22
Description
mediator complex subunit 22 [Source:HGNC Symbol;Acc:11477]
Coordinates
chr9:136213395-136214972:-
Coord C1 exon
chr9:136214777-136214972
Coord A exon
chr9:136213556-136214776
Coord C2 exon
chr9:136213395-136213555
Length
1221 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGA
5' ss Score
7.63
3' ss Seq
AGGTCTGTGCTGCACTCTAGGTC
3' ss Score
7.79
Exon sequences
Seq C1 exon
AAAAATCGAGGCGGGGCTGAGAGGCTGCGGCGGCTGACTAGGTTTTCGGACCGCGGCGCGGCGGGGAAGAGAGACTGCGGCGGGAGGGCCAGGCCGTGGGAGAGACGCGGGAAAGTGCGGGTCGCAGAGGCACTTGACCACCCCGCCCTAGGCCGACCCGGCGGACGCGGCGTCTGGTGTGCGGGCGCTGGGGCGG
Seq A exon
GTATGAGGGTGTGGTGGGGGGTGGGGATGGAGGGGGGGTGGGTGTGTGGGCGGGAGTGGGGGTGGGTGGGTGCGTAGGCGCTGGGGTCGGAGATCCCCTTTCCTGCGTGTGACTTATTTCCCACACCCCGCCAAAAATGGGCACAAACAATGCGAGTGCGTCCAGGAGTCCGCTCGGTCGTGCGCCAGACTCCGAACCTAGGGGGCCCCGGGCCCTCCCTGAGCACCGCGCGCAAAGGCCCGGCCCCAGGGCCAGGCAACTCCAGCGCCGAGGCCGTCCAGTGCGGCTGGAGGGCAGAGGCCGAGAGGCGCGGCGCGGAACTTGAGCCCCTTGTCCCGGCGCACCGGGGAACCATGAGGGATGTTAAGCGAGGGAGTGGAATTACCCCCCTTTTTTTTTTCTTTTGGAGACGTAGTCTCCCCCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCGACCTGTGCTTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCTGCCATCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGTTGGGGTTTCACCATGTTGGTCAGGCTAGTCTCAAACTCCTGACCTCAGGTGATCCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGTTGGAATGACCACTTTTTAGGACCTCTTCCCTGCCGCGCAGAGACTGGAGGGAGCGGGGCCCGCAGTGCAGGGATGAGGTCTGGAGCGGGGCAGCCTGAGTGGGAGTGGAAGGAAAGCGTGGATGTAGGCGGTGCAGAGGGGTCGAATTGGAAGGACTCTTCGGATGGGAGGGCGTGGCGAAGGTGGCGGCGGGCTAAGAAGTTAAGCCAAGGGCTGGGGACGGGGAGCTGGTGTTGAGTTTGCAGGGCTCCCTGGGACACGCTGTGGGCCTGGACGTGAAGTCTGGACTGGAGCCCTGGACAGGGCTTGGAGGGCTGGCCAGGAGTTCCAGGATGAGCTTGCTCTGGCAAAGGCGGGGCCAGTCCTGGCACCCCCTGCGGTGTCTGCTGATGGAATGAGTTCATCTGTGTTTCAGTGATTGACTTTATTTGGCAGAAAGGGAATCCCCAGAAATCTGCGTGTTCTGCTAAGGTTGGGGCATAGAGGGTGGCTGGGGTAGACTCTGCCTGCACTCAGAGGTCTGTGCTGCACTCTAG
Seq C2 exon
GTCCCAGGTCTCCCCGCTGCGCTGCTTGAGGCTCAGCCATGGCCCAGCAGAGAGCCCTGCCCCAGAGCAAGGAGACGCTGCTGCAGTCCTACAACAAGCGGCTGAAGGACGACATTAAGTCCATCATGGACAACTTCACCGAGATCATCAAGACCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148297-MED22:NM_181491:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.173
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF061797=Med22=PU(23.1=65.9),PF146811=UPRTase=PU(27.8=78.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAATCGAGGCGGGGCTG
R:
GCGGTCTTGATGATCTCGGTG
Band lengths:
353-1574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)