BtaINT0091691 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50788073-50790514:+
Coord C1 exon
chr16:50788073-50788201
Coord A exon
chr16:50788202-50790385
Coord C2 exon
chr16:50790386-50790514
Length
2184 bp
Sequences
Splice sites
5' ss Seq
ACGGTGGGT
5' ss Score
8.27
3' ss Seq
AGAGGCCCCCCTTCCCCCAGGCT
3' ss Score
7.06
Exon sequences
Seq C1 exon
CTTGTCCTCCGGACACCTTCGGGAAGAACTGCAGCTTCTCCTGCAGCTGTCAGAACGGCGGGACCTGTGACCCTGTGACGGGGGCCTGCCGCTGCCCCCCAGGGGTCGGCGGAGCCCACTGTGAGGACG
Seq A exon
GTGGGTGCAGCCCCTCCTTGACCTCTGGGTTCATCCTGGGGGTGGAGGTGAGGGGCAGGCACCACCTCTTGGCTCCTGGTCCCCTTTCTCCTGCAGTGGTGGGGAAAGTGACGGTATGGTATAGAGGAAGCCCTTTAGTGCAAGGAGCACTGGGTTATCATTGGCTGTTCTCACAGGGCCTGACTAACGCAGGTGGTGAGGACTTGTGGGAAGAACAGCACTTTTGTAACTGGGTCCCCTGAGAAGTGGTGAACTCCCTGTTCCTGGATGCATTCAAGGAGAGCTACGCGATGGCTGGGTGGGGTTTGCAGAAGGGAGCGTGCCTGGGCTGTGGCTTCTTGGGATGACACTAACATCCTTTCTAACTCTGAAGTTGCAACATTTTTGGAGGAATTGGAGTCCACAGAAATTTCCCAGGTGCCTGACGCTTCATTTTAAAGTCTTCAGACCTTTACGTTTCTGCTGCTTTTGCTGGCAAATACAGCTAGTATATCAAGGACTTCTGTCTTAGCAGCGATGGCAACAATTGGTGGACGGTTCCCAGTGCCCAGGCGGCCTGTGTGGGGTGGCAGGGCAGGTCTTTCTGCCTCCTCCCTCCGGCCACCTTCTCGGCTTGGTCGCATCCCTGGCTCTTTTCCTGCGATCCGCCATCCCTGCTCTGAGTGAGAGCTGAAAGCTCCCTGCCCGTTGGAAGCTGTATGTGTGTTGTTCAGCTGCTAAGTTGTCCCACCTGTGGCCCTGCGGACTGCAGCACACCAGGCTCCGCTGTCCTTCACTCTCTCCCACAGTTTGCTCGGACTCGTGTCTGTCGAGTCGGTGATGCCATCCAACCATCTCATCCTCTGCGCCCTTTCTCCTCCTGCTCTCAATCTTCCCCATCATGAGACTCTTTTCCAATGAGTTGGCTCCTTGCTTCAGGTGGCCAAAGGATTGGAGCTTCAGCTTCCAGTGAATATCCAGGGTTGATTTCCCTTAGGATTGACTCGTTTGATCTCCTTGCTGTCCAAGGGATTCTCAAGAGTCTTCTCCAACTCCACAGTTTGAAAGCATCAGTTCTTTGGTGTTGAGCCTTCTTTATGGTCCAAATCTCACATCCATACATGACTACTGGAAAAACCATAGCTTTGACTATACGGACCTTTGTCAGCAAAGTGATGTCTCTGCTTTTTAATAATGTGCATTTAGGTTGGTCATACCTTTCCTTCCAAGGAGCAAGCGTCTTTTAAATTCATGTATATGTGACGGGTCCTCAGTGGACCCATGGGACTCCTAGCAGATAAAGGGCCTCCATCTCAGTACTTCCCTTGGTGACGTGGTGTGGCTTCCCAGAGGCTAGGCCTCAGTCAGGGTCCTGTGAGTAAAGTGCACCTGTGCAGGTGAGCTGGAGAAGGTTCGTCCCAGCTCTCAGGGGTCCCTCTACGAGTTTCCTAGACTCCAGGTGCCCCGGGCTCATGACTGTCCCTCTAGCCTCTGCCTCCGTCTCCCCATGGCCTCCTCTTTTTGTGTCTAGCCTCCCTCTCCTTTCCCTTCTCGGGACACTTGTTGGGTTAGCTCGCTGGGACAGTCCAGGATGGTCCCACCAGGAGATCTGGATGGCCAGGATGTGGACGTTCCTTGGGGTCACCATGCAGGTCCCTGAAGCCCTTCAGAAGGCAGGTCAGGGGCAGAGCTGAGTCAGAGTGAAGCATTTGGGGAGGAGGGCACAACCCCGCCCTGGCCCTGGGCCCCTTGAACTTGGGCCTGTGTCCTTCCCTCTGTGAGTTCCGGAGGCCAGGCTCGATGACCACTGAGGGACAGGCATCAGGATGCTGTCGGTGCCAGTCAGATGGAGAGCGTGGGCTCTCGGAGTCACTCCTGCATGTGGTGAAGATGTGATGGCCTCCGGTCTGGCCACCGTCCGGGGCCGCAGACCCTGGGGGCACAGGCCCGCAGGGGCAGACGGCCACATTCATGGGGCTCACCTCATCCTGCCCTGCCCCCGGAGGCCCTCGCCAGCCCAAGGGACCCTCTCTGTCTGGGGCACAGGGTCCTTGGGCTTCCGGTGGCCCTGAAGCCCTGCGGCTGTACCCTGGTGGCCCAGGCCTCTCCAGGCTCCTGTACTGGGTGCTAATGTCGCTCTCGGAGCATCTCCTTGGGTGGGAGGCCATGTCTGGGTGGGCAGTCAAGAGGCCCCCCTTCCCCCAG
Seq C2 exon
GCTGCCCCAAAGGCTTCTATGGCAAGCACTGCCGTAAGAAGTGCCACTGTGCCAACCGGGGCCGCTGCCACCGCCTCTACGGGGCCTGCCTCTGTGACCCGGGGCTCTACGGCCGCTTCTGCCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839:ENSBTAT00000027771:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(66.0=75.0)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(32.0=36.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development