GgaINT0134964 @ galGal3
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:988903-989809:+
Coord C1 exon
chr21:988903-989031
Coord A exon
chr21:989032-989680
Coord C2 exon
chr21:989681-989809
Length
649 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
CTCACCATCGCTATCACCAGGGT
3' ss Score
6.22
Exon sequences
Seq C1 exon
CCTGCCCGCCTGGAACCTTCGGCAAGAACTGCAGCCAGCTCTGCCTCTGCCAGAATGGGGGTACCTGTGAGCCCGCCACCGGCACCTGCCGCTGCCCCCCTGGCGTGGCTGGGATCCACTGTGAGGATG
Seq A exon
GTGAGAGCCCTACAGCTCTGTTCCATTGGTATTTTTCCCTTGCCGAAGCAATGAGCATCTCTGTCAGGTGTTCACCATGTGCTTCTTTGGAGCCTTTTGTGTTTGCTGGTGTTGGTCCCCCCACGTCTGAGGGTGTTCCTCGTTCCCAAAGAGTTAAAATCTGGGGGACATGGGAGCAATGAGACAGTGAGGGATTCGGCCACAGACGGAGGGTTGGGATCATATGGAAGCAATTGCTGAAGGAGGAGAAGCAGGAGATAGCTGGAGCTCTTCTTTCTGTAGGAAGGAGGTGGTTGAAGGGTGCGAAGAGAAAACAGGAAGGTGAGATGAAAGCAAGCAGCGCTGTGCCGGGTGGCATTTCCTGCCCTGCTGTCTCCTGGGGAGGGCTGTGCTGCAGCTTTGTGCTGACACAGTGCATCATTTGCGTGCTTCTCACGTGGAGCACTCAGTTCTGAGGTGGTACAGGGAATCCCATTGCCCTATTGCCCTTACTAGAGACCCCAGCACGTTCCTGGTCAGACAGCAGTCCCTCCCTCACTGCACCCTGTGCTTAGGTTTGTTTGTGATGATGTACTCCGGTTTTGCTATGTGTCTTTCCTGCAAGACATGCGATTACAGACCCAAACCTCCTCACCATCGCTATCACCAG
Seq C2 exon
GGTGCCCGAAAGGGTTTTTTGGAAAGCAATGCAGGAAGAAATGCAACTGTGCCAACCGAGGTCGCTGCCATCGGATCTACGGAGCGTGTCTGTGCGATCCTGGCCTGTACGGCCGGTACTGCCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(66.7=77.3)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(31.4=36.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCGCCTGGAACCTTC
R:
CAGGTGGCAGTACCGGCC
Band lengths:
255-904
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]