BtaINT0091696 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50795687-50796040:+
Coord C1 exon
chr16:50795687-50795818
Coord A exon
chr16:50795819-50795911
Coord C2 exon
chr16:50795912-50796040
Length
93 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CAGCCTGTCTCTGCCCACAGCCT
3' ss Score
9.1
Exon sequences
Seq C1 exon
ATTGTCCCGAGGGCCGCTGGGGGCTTGGCTGCCAGGAGATCTGCCCGCCGTGTGAGCACGGTGCCGCCTGTGTGCCGGAGACTGGAGCCTGCCTGTGCCGCCCCGGCTTCATGGGCAGCCGCTGCCAGGATG
Seq A exon
GTGAGTGCCCGCTGCCCCCACCTCAGCCCTGCCCGCAATCACAGCCGGCCCCATGTCCGGCCCCAGCTACGCTCAGCCTGTCTCTGCCCACAG
Seq C2 exon
CCTGCCCTGCTGGCTGGTTTGGACCTGGCTGCCAGACGCAGTGCTCCTGTGCCAACGATGGGCTCTGCCACCCAGTGACCGGCCGGTGCAGCTGCGCCCCTGGGTGGACTGGCCTCAGCTGCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839:ENSBTAT00000027771:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005319=Laminin_EGF=PU(70.2=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCTGCCAGGAGATCTG
R:
CATCGTTGGCACAGGAGCAC
Band lengths:
169-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development