GgaINT0134969 @ galGal4
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr21:1020743-1021303:+
Coord C1 exon
chr21:1020743-1020874
Coord A exon
chr21:1020875-1021174
Coord C2 exon
chr21:1021175-1021303
Length
300 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CTCATGTCCCTGCATCGCAGTGT
3' ss Score
6.62
Exon sequences
Seq C1 exon
CCTGCCCAGAGGGTCGCTGGGGCCTCGGCTGCCAGGAGCTGTGTCCTGAGTGTGCCAACAACGGCAGCTGTGACCCCGCCACGGGAGCGTGCGTGTGCCCACCGGGCTTCACTGGCAGCCGCTGCCAGGATG
Seq A exon
GTGAGCGTTGGGTCATGTTGGTGAGCATTGGGTTGTGATGAGCGTTGGGTCATGGTGAGCGTTGGGTCGTGATGTATTCTGGGTCCGTGATTGTGAGTGTTGGGTCCATGATGGTGAGTGCTGGGGTCGTGATGAGCAGTGGGGATGTGGTGAATGCTGGGTCCATCATGGTGAGCATCGGGTCATGGTGTTGGAGTCGTGGTGAATGTCGGGTCCGTGATGGTGAGTGCAGTGTTTGTGGCTGTGAGCGCTGTGCCCTGGGCTCACTGTGGAGTTGCAGCTCATGTCCCTGCATCGCAG
Seq C2 exon
TGTGCCCACCCGGCTGGTTTGGCCAGGACTGCCAGCAGAGCTGCAGCTGTGGGAATGAGGGCCATTGCCACCCTGTGACGGGGACGTGCAGCTGCGCACCCGGCTGGACAGGTCACGACTGCCGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=28.9)
A:
NA
C2:
PF126612=hEGF=WD(100=29.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCAGAGGGTCGCTG
R:
GGCAGTCGTGACCTGTCCAG
Band lengths:
254-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]