BtaINT0091716 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50771702-50781633:+
Coord C1 exon
chr16:50771702-50771824
Coord A exon
chr16:50771825-50781507
Coord C2 exon
chr16:50781508-50781633
Length
9683 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
GACTCCTCTCGGGTCTCCAGCCA
3' ss Score
4.39
Exon sequences
Seq C1 exon
ACGTGGACGAGTGCCAGGTGCACAATGGCGGCTGCCAGCACCGGTGTGTGAACACCCCAGGCTCCTACTTCTGCGAGTGCAAGCCCGGCTTCCGTCTCCACGCGGACGGCAGGACCTGCCTGG
Seq A exon
GTAAGCAGTCTCCTGGGCCCAGCGCTCCTAACCTCAGCCGTCACCCCACCCTTCTGGGTGTGCCTAGGTTTAGGGGGTCCCTGCACTCCTGCACTGATGGGCCCCAGGGGGCCTGTCTGCTCAGTGCAGCCACCATTACAGTGGCCTCCGTACTGCCGAGTGTGGCGTGCCAAGGGGCCCTCGCCACCCATCGTGGGCCCTTGCCAGCACCACTCCCGTGAGGTCACCGGCGCTCAGGTGGTGAAAGAACGTGTCCTGGGCCCGGGTCTCTACGCTGAGGCTGGCCCCTGGGCACTGTGACCTGGGCTGAGCACCCTCAGTGGTCACAGCTGAGTCCGGCCGGGATGCCAAGCCCACTTCCCAGGGGACTTCCGCAGTGGGGAGGAGCCCTGGGCCACCATCCCCTCCAGGGCCCTCTGCCGCAGAGGCTGTGGACGTCCGTCTCCAGGGACACAGGTCTGGCTGTGCTGCCCCAAATGGGAAGACTTGGTGCCTGCCGGGTGGTGGTGGGGGGTGCCCTGCCTGGGGCAGGGGCAGTGCAGAGTTGCTCTTGGTCTGCAGAGCTGGGTTCCCTGGCTCAGGCCCCCCATCCGTCTTGAAGAGCCTGGGGGTGGGGGTGTGACAGGCAGGGACATGGTAACCAAGAGGCAGGGTATTAGCCCTCACTTCCTCTGTGGGGTCTTTTTACTATGGGGAATGGGCTTGATGGGGGCGCCTGGGGCCAGTGACAGTTGCCCCTACCAGCACAGTTGGCTCCAGGGAGAGAAGGGGCACGTGGGTGCCCACTGGGCAGAGGGTAGAGGGCTGGAGTCCAGGAATCTGGCAGTGAACGGTGGCCATCCACTGCCCTCACCCACCCCCCCGATCCCGGCTGCCCTGGACACAGGTGTCGCAGGCAGGGCTGCCCCTCCCTGCTGGCCGCTTTGTCTGGCAGGCTGCGTGGGGGTTGTTCTCTGGGGGCTGGGCTGGTGGTCACCTTCCCTGGCCAGGGCTCTCTCCCTGGCTGTGGCAGGGAGCCCCTTCTTTCCACCCTGGAGACCCGGAGTGGGCCCAGGCGGGCTCTGAGCAGCCTCCCTCCTGCACGCCTCGTTGCTATGTGGCAGGGCGGCCCGCCAGCCCTGGGGGGCCCTCCCCAGAAGACACGCTCACATGTCCGGGCCGCCACTCAGGGAGCGAGGCTGCTGCCCTGTAAAGTTTCAGAGCTGGAAAGTGGAAACAGATGCAGGAATGTTGTGATGTGCTTCAGGACAAATGCAACAGAGTGCAGCCCGGCTGCTGATCGCCGGGTCCCCTGTATTCTCCCTTCCTCTGGGGCAGGTTCTTCTCAAAGAAGGGTGTCCCTGGGGGCTGGTCCAGGGTGGGCTTGGCTGGGACACCCTCCTGTCTCCCTGGATCCCCCTAGTCCACCAGATAGTGGTCTTCACTGAGCTGCCAGAATGGGTAAACAGCACGCAAAGGGGAGGGTGCCTGTCAGGGCTTTGGGAGGATTGTGGCAATCTCTAACAGTGCCTTGAGCTGCTGGCGTCGGGCAGCCCAGGAGGAATACCCCGCTTCTGGAGGGGGATAGCCTCCTTCAGGCAGCCCAGGAGGAAAGCCTAGCCCAGCCCAGCCCATCACTATGCTGGAGCCCTTCCCTGGGAGACGCCTGGGCTCAAGGCTCCTGAAGTCTCCATCTGTGGCATTTGTTCACGTCATCGACTCAAAGGACATGTGTTTGAACAAACTCCAGGAGATGGTCAAGGACGGGAAAGCCTGGTGTGCTGCAGTCGCTGGGGCTGCAAAGAGTTAGACACGATTGAGAGACTGAAAAGCAGTAACAACACAGAGTCTTCTAAAGATCTGATGCCAGGACCCCCAGTGTGGTCTGCACAGCCTGGTATGAGGCTGCTGGGACCTTACCACCCCCTCTGCCTACCACCGTCAACTCTGTACCCCCAGACTGTATGGTCCCTAGGACCTCAGGGGGTCTGCAGCTCTCTTGGGTGCTTGTGCTCACCTCCTGGCCACCCACCTCCTGTCTGCTTCCGTCAAAGGGGGCAGGTGAAATACCCACATTCCACAACTTCCAGTCGCGGCGGGAAATACATGCTGCCTCCCCTGCACACACTCACTCACACGCACGCACACCTGTGGGCAGATTCCAAGTATCTGAAATTCCTGGGAGCTGACACCTGCAGGCCAACCCCCAGGTCTCCTGGGAGTGATGTGGGTTTGTCAGCCCGGGTCTGTTGGGGGCTGCCTTCCCTGTGGGGGGCCCGGGCTTTGCCGGAAAGTTTCCAGAGCAGATAGGGGTCTCCTGGGGACTTTCTCCCAGGCAGAGCAGGAAGCAGTTGCTCTAGGGGCACCCTCCCTTCTCCCTGAAGGGCCCCTTTGGGTTGTGGAGGGACCCTCCCCAGCAGCAGAGCACCTGACCTACGGCCCTGGGATGGGTAGGGCGGCCGAGCACCAGATGAGGGGCTCCAGGTGGGGCCTGGTGAAGGGCACTGCCTGGCCCCTGCCAGGCTGCTGGAAGTCCCTGCTGCTTTGTGAGAGGTGTGGGCCCTCCCCGCTTCTCCTCCAGGACTCCCAGACCGCAGGGTGTGGGGAGGAGCTGGTGGCCTTGTCTGAGGTTCACAATGGGGGCACCCTCTGGGCCCAGCCCACCCTAGGGTCTCAGCAGACATTGATGGGAAGATCAGCGTAGGACTAGGCCCCTCCCCAGTTGTCCCCTCCCCCACGCAGGCCAGCTGCAGGCGGGCTGCGCAGTTGGAGCACAGCTGCCCTGGACCCCCTCCCTGGGGCCTGCTGGGATCCTCTGGGCAAGGGGAGGAGTGCTCTGAGCTCTCCTGGGACTGGCAGGGCAGGCAGGGGACAGGTCCGGGCACCCCTCCCTTCAGCAGCTTGGAATGAGGGTTATGGAAATGCTAGAGAGTGAGAATAAAGAAGGTACCCACAGGGATGTGACAGCTCTTCCTCCATACAGGGTGGGAAGGCCCTGCGTGCTGGGAGCTCTCAGGTTGGTGCCGCATCATGGTACCCAGGGATCTGGGAAGTCTTCAAAGGTGGTTTTGCTTAAGGAGGTGGGGAGGCCTTGAAACAGACAAGGGAAAACTTGAAACACTCTTTCAAGGTGCTTTAGAGGCAGGGAGAAGACAGAAAGCACACAGTCTTCCTGCGCCCCTCCCTTGTAAAAGGCCCCTTGCAAATAACGGGGAAAAAGTTTCCATTTTTAAAGTGAAAATTTGCAGGAAGGATCTTGCTGTCAGCCTCAAAGCCCCTGAGTGCCTCACGTCTGACCTTGGCTGCTCTTGTCCAGCCTGGGCCCAAGAGAAAGAAGCAGAAGCAGCCTGGTGTCCTGGGTGCTCCACCTCCTGGTGGCTCCACCTGGGAGCCCCCTGGGTTTGTCCCTACCCCCGCCCCAGCAGGCTCTGGGGTGGGAAGAGGTGGGCAGAGAGGCCGAGGGCTGGTCCAGCCTGCTTCTCACCCTCAGGGATGAGGAACTGGGCCCTGTCCTTCCCCAGACTGTGGGAAATGGAGCTGCAGAGAGCTGTGCTGGGCGGCGAGCCTGGGGGCACCTATTCTTTTCTGTGCCATGCAGTGCACCCAGGCAGACCCATGGAGACCCACTCCCGGTCTTTGGGAAACCCTCCTCCTCCGGGCTAGGGTGACTCCTGCCCAGAGGTCCCTCCTGGATCCTGGCCTTGAATGTTCCCCATGGTGAGCAGCACACCCCGTCTGAGGGGCCATGATGTCACTGTCAACGAGCAGAGGGGCCCCTGTGACGCCCCGGGGCCAGCCCCTGGGGAGAGGCAGGTCCCCTCCTCCTCCTCCCCTCGGCCTCAGGCCTGTTGAGTCTTTTGGATGGACACTGTGGGGAGGATTCTGCTGTCAGCCTGCACCCCTGGTGGTCTGGAGTCAGATGAGCCCCACTGCAAGAGCCCCTGGAGGAGGAAAAGGGAACCCACCTCAGCATTCTTGTTTGGAGAGTCCCATGGACAGAGGCCCTGAAAGGCTACAGTCCAAGGGGCTGCAAAGAGTCGGATACGACTGAGCAACTGAGGGCACACACAGTGCCCACAGTACGGGGAGGCTCTTCCTGCACCCCGCCTGCCTTTGGGGTTCTCCCTCAGGTGTGCTAAGTGGCCTCGGGGCAGACACTTCCCCAGGCCTGGGTCTCCCCGGTGAGGGGATAGCAAGGTGTCTGCACAGGGCCCCACAGCCTGCTGTCCCCCGACTCCTTGGCGGGGAGGCTTCCAGGGCCCCTGAAGGCTTCGTTGGCAAAGCCACAGGCAGCAGAGGGGTGGAGACTGCTAGGCTGTTTGGCAGAGCTCGTCCCTGCAAACCACAGACAGTTCTGGCCACGTTTTCAAGTCACCTCCAGGCCTGAACCAGGCTGCAGTTTCTGAAAGTGCCTTCCCAGCCCCAAGGGGCCACTGAGTCTGAACAGGGAGCAGGAAGGGCCACCCTGCCCAAGGCCATCCTGGGAGGTCACCCCTGTGCCCGAGACCAAGCCCTGTATCTGTAGGCTGCCAGTGCCCAGGGAGGACGGGAGGGTTGCACCCTGACCTGGGGAAGCTGGGGCAGTGCCCACAGACCCTTGGGCTGGATGCAGAGACCCTGTGGGGAAGCAGGGGCAGACTGGGGCCTCAGGAGGTGGGGGGTTAGAGTCAGAGAGTTTATGAGGGCAGAACCTAGCAGGGAGCACAGCGTGGGAGGGGGGAGAGGTGTGAGAATGCGGATGACCTTGGAATGTGTACCAGGGGCTGCAGAGCCCGGGTCCTCACCTGTGAGTGCATGTCCTGAGGTGGGCAGGCACTGGGCAGGGCAGCTGCAGGGCCTGTGTCCAAGCTTTGCTGCTTTCTCTGGCCGGGCCTGGTGAGCGTGGGTGCTGGGCGGTGCAGTCTGTGATGTGGGTGCCGGTGGGTGGGAGGGAGTGTGGCCTGTGGGTGGGAGCGGCTGAATCTATGCTGCAGGGGAACTGTGCCACCCTGGGCAGTGTGGAGGCCCCAGCAGAGGGTCGGGGATGGGGCAGGATGCATAAGGCCAGGCTGTAGGCAAACCGTGAGCTGCCAAGGAGTACCCGGCGGGCCAAGCCCACGTGAGTCTCCCTCACTGGCTGAGCCGGTGGACCACCCCTTTCCAGTCCCGCCATCCCAGCCCTGTGGCCAACAGAGGGCTTCCTAGAAGTATGGGCTGTACATGGCTGCTGACCACACGTGGTGTGAGGCTCTTGGGACCTGGAAGCCAAGCCAGTCTGAGGGCAGTCATTACGAACCCACAAAGCTGCCATCCAGCCTATTCTGATCCACCGGCTGGGGTTGGAGGCTGGAGCAGAGTGGGCTGGTGGGCTCAGCACGCTGCCAACAGGCTTGTCCTAACGCCAGCAGCCTGCCAGGCACAACCCCTTGAATGACCAGCTCGGGCGGGCCACCGTGCTGGTGTCCCAGGCCAGGGCCTCGCCAGCGGAGCTGCCTCGCAGGTCAACCGTGCAGAGCCCTACCTGCACCTCCATGGCACTCACACACACCTAATGCTGGGCTCCAGGTGGTACCACCTGCATCTCCAGCAGTGGCTAGTCAACCAGCATGCATGGAGCAGATCCTCCTCCCTGTAGGACATCTAGAAGGTCCAGTTTCCTCACACCTGGCTCTGGGCTGGAGCGACCCCTGCAGGCGAAAGACGGAGTTGTAGCCTGCACTATTAGAACCCGGGGCTTCCCTGGTGGAGACATGGGTTTGATCCCTTGGTCTCAAAAATCCCTTGGAGGCATTCTTGCCTGGAGAATCCGATGGATAGAGGAGCCTGGCGGGCTACAGTCCATGGGGTCACAAAAGAGTCAGATGCAACTGAATGACTAACGCTTTCACTTTCGTTTCTGTTAGAACCTGCAAGTCCCCTGGTTCTGGTGCTTGCAAACTGGGAAGTGAAGGTGCAGTAGTCGGCTCAGGCTGCCCTAACCAACGCACCGACTGGGCGGCTTAGAGAAGTTTATCTTCTCACTGTTCTGCAGGCTGACAGTTCTCACTCATGGTCCCAGCCAGTCCAGTCCCTGATGAGAACATTCTTCCTGCTGTTGCCTCGTGTGGCCATGGGGACAGAGACAGAGAGAGACTTTATGTCTTTCCTGTTTTTTTTTTTTTTAAGCTCCTTCCCATATTAGAGAAAGGGAGGTCTTTATTGTTAACAAATACTTTTATTTTTTTTGGCTGCAACAATACTGGGGTGATTTGCCATTTTCTACTCCAGGGGATTTTCCCAATCTTGGGATCAAACTCAGGTCTCCTGCATTGCAGGGAGATTCTTTACTGTATGAGCCACCAGAGAAGCCAAAAAATATTTTTAGTTTAATTTTTCAGGCTGCAAGGCGTGTGGGATCTTAGTTCCCTGATCAGGATCAAACCCATGTCCCCTGAATTGGATGCCTGGAGTCTTAATCACTGGACCGCCAGGGAAGTCCTTATATCTTTTCTTTAAAGACACAAATTCTGTTGGATCAGGGCCCCACCCTTATGACCTCATTTAACCTGAATTGTTGTTGTCCAGTCACCAAGTCATGTCCGACCAATGGACTGCAGCATGCCAGGCTTCCCTGTCCTTCACTGTCTCCCTGAGTTTGCTCAAATTTGTGTCCATTGAGTCACTGATGCCATCCAACCATCTCATCCTCTGCCACCCGCTTCTCCTGCCCTCAGTCTTTCCCAGCATCAAGGTCTTTTCCAATGAGTTGTCTCTTCTCATCAGGTGGTCAAAGTATTGGAGCTTCAGCTTCATCATTCAGTTCAGTTCAGTTCAGTCGCTTAGTCATGTCCGACTCTTTGTGACCCCATGAATCGCAGCATGCCACACCTCCCTGTCCATCACCAACTCCCGGAATTCACCCAGACTCACGTCCATTGAGTCAGTGATGCCGTCCAGCCATCTCATCCTCTGTCACCCCCTTCTCCTCCTGCCCCCGATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCTCATGAGGTGGCCAAAGGACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTTGGCGCTCAGCCTTCTTCATAGTCCAACTCTCACATCCATACATGACCACAGGAAAAACCATAGCCTTGACTAGATGGACCTTTGTTGCCAAAGTAGAGTTGATTTCCTTTAGGATTGACTGGTTTGATCTCCTTGCAGTCCAAGACTTTTAAGTCTTCTCCAGCACCACAATTCATTATTTCACTTCCAAATATGGGCACATTGATGGTTGAATTTTAGAAGTGCACATGTGAATTGCAGAGGTACACAAACATTGGTCCCCTTAGGGGCTGTGGAACCCCCTCGCTCCTGAAGCTCGAAGCTTCAGCTCTGAGCCTGGTCCATTCAGGCATGGGGCAATGGTATGTGGACTCCGTGGCTATGACTCACAGTGACCTGAGGGCTTGGAAGCTTTATCCCCAGCTCTAGGCACTGGGCATGCAGAGGCTGGCCCTCCCCTGAGCTGTACAGCCCAGTGCCTGAGAAAAACTACCTTGCTAAGCTTTCCGGGCATCCTGGGCACAGGATGTGTGAGATGATGATGTGGGACTTGGCTTCCTCGTGTGTAGCACAGCTTGGGGGCATCTGGAACGTTAGGATTTGTACAGCAGAGCAAGAGACTCGGGCTGGTATTGGGGAGGCTCAAAGCTGCATGGGGAGCTGGACACCTCCGTGGGATTTCTTCCCCGGTGGGCTTCTGTGGGCCCAGTACCAGGTCGCCCCTGGACCCGTCTCGGGGGTCCTGCCATAGCTCTGTGGGACGTCCTTGCAGCCGCAGTGTCTGCCCAGCCGTTCCCCTGGCCCTCTCTCTGTGTGCCTGCCCGGCGCTGCCAGGATGGGCTTCTGGTTCTTGTTATGAGCTCTGAGCAGTGATGCAGTTGGTGCTGTAAACACAGACAGGGCCCCAGGAATGGGCTGGCTCAGGCCATACTTGGAAGCCTCTGGAGTTGATGGCAGTGGGTTAAGCAGAGCTGTCTCGGGGGAGGAATGTGGGGCTTTGGGGGTCAGCGCAGAATTGGGGGTGGGTGGCTGCAGAGGGGGCCTAGAGGCTGTCTGGGACCGGAGACATGGCCATCCTGCTTGCCTCCGTCCGAACCGGATCTCGGGTCTCTGCTGCTCCCCCTCGACACGTGGCAGAGGCAGATGTGGCCAGGAGACAGCCTGCCCTGCACCCTGGGTGTTCACTCCACCCCAAGAGCAGGGCTGGCTCGGCCCCGGGGGTACCCTCAGCTCTAGTTCCTCCCCCACACACTCCTCGTGGGGAACCAGCAGGATGGCGAGTGCTGGGTTTTGGCTTTTGGGGAGCATACTTGCTTTGAAGGAAGTCTTGTTCTTGGCAGACACTGTGGGCCTGGCCACTCTGAGCCTTGAGGCTGTTCGCTTGCTCTGCGTGCAGACACGGCTGCTCCTGGCTCCACGGGCCTCAGTGGTGGGGTGGATCGCTCCTGGCCCCCAGACCCACTGACAGTGAATGGCCTCTCCAGACTCAGGCCCTGAGGCCCCCCTGAAGTCTGTGATGACAGCACAGGTGGTGTCTGGGGATGAATCCCTGCCCCCCGGCGGTCGCTGTGTTTAGTACCAGCACTCAGGCTTGCTCTGGCCCAGGCCCGCTGGGCAGTGATCTGCGCCTCACCGCGGTGCATTCTTGAAGCTTTACTGCAGAGCTGGGGACCTGTCCCTCCCTAACCACAAGGCCTCTACCAGCGACTTGGTGGAGCTACCGGAGGTCAGGTGTCCTCCCTGGATGCCCAGTCTCGCCCAGTGCCCTCTTCCTGGGCACAGCCTCAACGCATCCACACAGGACATAGGCACCCACTTGCCCAGCCTGACCCATAAGAGCCTTGCTGTAGGTGGGCCTGAGCGGGAACACCTGGACCCCTGGCATCCTAGGACTGGGATGGGGGTCCCTGGCTCTGACCTCACCAAGTGCTGTCCCCACAGCTGCTGAGAGGAGTGGGGTCTGGGTGAGGTCAGGTGGGGGTGAGGCCCCACCTGGGGTGGGCGGGTGCTGCAGTGGTCCGACAAGCTGGTGGCTAGGCCTGCAGGTCATGTTGGCTGTCCACGGAGGCCCATGCCTGCCCCTCTGCCCTGGCCTGATGACCAACAGTGGAGTGTGTGGGTCTTCCCCAGCCCCTGCTGGCCTCCTGCTCCTCCAGGGAGGCTCCCAGCCTGCTGGACCCTGAGCCCTGGATGCCCTGACCCTCAGCAGGGCCTGGTGTTTTGTGCTCTGTGCCCGGGGTTGCGGGGCAGGGGCTGGGCTTCCACTGGGGCGCTCTGCAGTGCCTCCTTACATCCAGTCCTGGGGCAGGCTGGACCAGAGGACCCAGATTCGGATCATGGCCCTGTGTGTCCCATGTGTGGGCCGAGAAACAAAGCCAGGCCTGCGACCTGGACGGGAGCTGTGCTGCCCTCTCAAAGCCCCTGCTTTTGGGACGCGGACAGGAAGGACGGAGGGGCTCGGAGGTGCCAGAAGCTTCCTGCAGGAGGTGCTCTGAGCCTGCCTGGGGTGGAGCCCTTCGGCCGGGCCGTCCTCCTGGGGTGACCTGACTCCTCTCGGGTCTCCAG
Seq C2 exon
CCATCAACTCCTGCGCTGTGGGCAATGGTGGCTGCCAGCACAACTGCGTCCAGCTCACAGTGACCCAGCACCGCTGCCAATGCCGGCCCGAGTTCCAGCTCCAGGAGGATGGCAGGCGCTGCGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839:ENSBTAT00000027771:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=86.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development