GgaINT0134955 @ galGal3
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:980057-984408:+
Coord C1 exon
chr21:980057-980180
Coord A exon
chr21:980181-984282
Coord C2 exon
chr21:984283-984408
Length
4102 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TGCTTCTTGTGCTTTCCCAGCGC
3' ss Score
8.21
Exon sequences
Seq C1 exon
GATGTGGATGAGTGCCAGGTTCACAACGGGGGCTGCCAGCACAGATGTGTGAACACCTTTGGTTCCTATTACTGTGAGTGCAAGCCGGGCTTTCGCCTGCATGCAGATGGTAGAACCTGCATTG
Seq A exon
GTAAGTCAAAGGTTTTTGTGTTCCTTGGGAATGCCTACTTCTTCATAGCCCTTGTTGTACCCGAAAGTGTGTGCTGTTGTACGTGAAGTGGTTGATGTTGGCTTACACTCTTGTATCATGGCCCCTTTCCCAGGTAGCAGTGATAGGATGAGAGGGAACGGCCATAAGTTGCTCCAGGGGGAGCTCAGGTTGGATATAAGGAAATGTTTATTCTCCAAAGGAGTGGAGAAGCTTTGGAACAGACTGCCCTGGGAGGTGGTGGAGTATCTATCCATGGAGATGTTCCATGTGTGGGTGTAGCACCTGGGGATGGAGTCTGGTGGACGTGAGGGGGGTGGGGGGTGGGAATTGGGCACGGCTCCTTTGGAACAGCAGAGCTGCACTGAACACTGATGGTTTTTGTTCTTGACACTTCTGTGATAGAAATACACATCCGTGTGTGTGTATGCCCCGCTGTCAGCACAGCTCGGTGCTGGCCCATTAGGACAGTGGTGTCGAGGGATGGAAGTAAACAACCTTTTTCCTGTAAAAGCTCAGAAGAGGGCTGTGGATCAGCAGTTCCAATGCTCAGTACAGTGATGGGGTGACTGCAGGGCTGGCTCATGCCTGGCCCCTCTGTGGTTGGTGTTGCAGATGGTAAAGCAAGGCACGATGCAGGGATAAAGCAGTACAGTCTTTCAGAAGTCCTCCAGGCACCTCTAAAAATGGGTTGTGAGGGGTCTGCTCAGCACCTTTGGTTGTCCACAGCTCTGCAGTGTGAGGTCCTGCATTGCCTCTGTTGTTCCATTATAGCGAATCTCTGATGATTTGAGTACAGAGGAGAACAGAGCCGGCGTTTCCGCCGAAAGTGAAATAGAGCAAAAAGAGCCATTGGACGTCCTGAGATCACCCCTCTTTATCAGAACCACATGGCAGGAGGCAGTGAGCTGACATCTTTGGGCCTTCTCCGTGGTTCCAGAGTGGGGGAGGGACTCCGGGGCCAAAGCAAAGAGTTTAATCTGAGCCCATTGCTTGTGTTGGCCGGCAGAAGGGCGAGATGGTCTGCATTAACACAGCGTGGCTCTGGAAATTGTCTGAGGTTGGAAGGAATCGGGTTGGGATTACGTGGCGGAGCCCTCTTCGTATTAACAGCATTCAAATGAAGAAATCTCGGGTTTAGCAGGGATTTACGTCGCGCCTTAAGGCGGTGTGTGGGCTCAGTCTACGTGATGGGATCCCACTGGGATGGGAAGGTGGTGTGGATGGGAATGTCGGGATCCAACAGCTGAGCACTGAGTGCATCCATCCTGCTGAGTGTGCGCCCTCATGCCACCCAATGTCCCGGGCTCAGGTCCTGCAGGGCCAGCCACAGTGCTCTGCTTGCAGACGATGGAAACCTCATCTGCAGAAAATCTGTCTGAGCTCTAATTACCAAAGGCTGCACAATGCACGGGATGACACTGGGTTTGGCAGCGGCGTCGCAGAAAAGCTGAGCAAGGAAAAGCATCTGGGAATGGAAATATTTTTAGAGCGGTTCTGTAAACAAAGAAAGAAAAGGAGCAGTAATTAGAACAAGGGCTGCAGGCTGCGCCGTGCCAGGAGCCGGCTGGGAGACCCCGAGCACATGGAACGGCACCCAAAGTGCTGCTAGCGTGTTTCGTTTGGTGTGCCTCGCTGTTCCTGCTCTGAAGTGGGGTTTGTTCCTCTTGCAGTAAAAGCAAAGCCCTGGCCCATGCACTGCACTGCTTGTCCCCGTGTGCCACGTACAGCAGAACGTGGCAGGGCTGCACTGCTGCCCCCCATTGCCCACAGTGCCACGTGGAGCACGTGGGCTCTCGCTATTTGCAAGCCAGGAGCACGAGGCTCCCATAGGGCTCTGAGAACACATTGCTAAAGGCAACCTAAAGGAAATGGTGGTGCCCATGTGTCTGAGTTACCCCATTGGAGAGCCTGCTGCGTCCAACCTGCAGCATCGCCATCAGCATCCTCTGCTTAAGTCGTGGCGTGGAGGAGGATCTGAACTTTGGGTTTTTTCCACTCTAAAAGCTTGTCTTCCAAAAGCATGCGAAGAGGGCAGTTGTTCAGACTGCACATTCATGGGATCACTGCATGCTGGGAGGTTATTTCAGATGTAAGATGTGTTGGCTGGTTATAGATCGGCCAAGCATTTTTCCCCATAAGGAGGAATATTTTGGCAAGCTTCAGCATTGTTTTACTGCTTTTATTAAAAAAAAAAAAGGCACTCCAAGCACAGCTCCATTATTTATGGGTGTTTTTAAATGTACATTATTAGACACTTAAATATAGCAGAAATGTTTGATGACCACCCATCTCTGCCCCATAGCTCTGCAGTCACCTCAGATACTTCTGCTGTCTCCTTCCAAATGGATTAAAGGAAACAACATCAATGAAGTAACACAGCCTGATAATTCTCACTCCAGCCCTGCGCTGTGTAGGGCAGCGTTTTGACCCCATGAAGTCATAGTTATTCCCCAAAATGCCTGCTTGGTTAATGGAGCTGATCCTTGCATGTGATGGTCACCATCAGACAACAGGCTGCAGTGGTGCAGGAGCCATCAGTGCACACAGTGTTCCTCTGCAGGGACGTGGCTTTGCTGTGGGACCCTCAGCTTCCTCATAGGATTTCTCAGTCAAGACTTGGGATCCTTCTGCAGTGCAGAGAATGGGTCGGAAGTGCAGGAACCCCTTTGGTGACAGAAGCCAGGTGTCCATCCCACCCGCAGTGTGTGGATTGCAGAGCTGGGAGGGCGTAGTGCAGTTCCTGCAGGGTCAGCTCCCCCCGTGTAGATGCTGGTGCTGCACTCTGAGTGCCACAAAGCTGCTGCTGCTGCAGCACTTATGGCTGCAAGTTGTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGAGGGCGCTTGAAATCCCTTCCCCTTGAATGCTCCCAGAAGAACCCACGGTGCCTGCGTGGCCTCGCCCTGTGTAATTGCTGTCCTTTGCATGGCTCGGAGCCAGGAACCTAATTTTCCATGTTATTTTGTGACAATAAAATCGGAGCATGCCCTGGGTGCAGCTCTCCGAGCACAATGAAGTGGCATTAGCAGTGGCGTTGCATTGGCACCATCTGAGCTAAGCTGAGATTTCAGTGCTGCCGTAGCAACGGCTTGCAGTCAGCCCACCTTGAAAACGTGAATAGCTTTATGGCTTCAAACCCTCAGCTGGTGCTTTCGGATGATGCTTCTTGTGCTTTCCCAG
Seq C2 exon
CGCTGAACTCGTGTGCGGTGAACAACGGTGGCTGCGAGCACGACTGCGTGCAGCTGACGGCCAACCAGCACCAGTGCCGCTGCCGCCGGCAGTATCGGCTGCGGGAGGACGGCCGGCGCTGCGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]