BtaINT0091718 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50782544-50784249:+
Coord C1 exon
chr16:50782544-50782666
Coord A exon
chr16:50782667-50784126
Coord C2 exon
chr16:50784127-50784249
Length
1460 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CCCCCAATGTCTCCCATCAGATG
3' ss Score
9.15
Exon sequences
Seq C1 exon
GGAGAAACCCATGCGCAGACAGGAATGGCGGCTGCATGCACAGGTGCCGGGCACTCCGGGGCCTTGCCCACTGCGAGTGCCGCGCGGGCTACCAGCTGGCAGTAGACCGCAAGGCCTGCGAAG
Seq A exon
GTAAGACGCCCTCTCTGTGCTAGGGCCAGTCCAGGTCAGCCGCACGGGGTCAGCTCCCTGCATCCCCCCTCAGGGGCCTGTGTGTGCGGGGCCAGTTCCCGTGTTGTCACTCTCGGCTGACCTGGGATGATGCAGGGTCATCTCTAGGACTGGGGTTGCCGGTGGCGGGGTGGAGGGTGGGAGATGGAGAGGAGGGGCGGGAGCTCAAGGAACTGCTCCCAAAGAGAGTCTCGTGTCTGCAGGAAGACAGTTCTCAGGGTGCCTTGTTAGTTTTAAATCTCTCTCTTAGGTGTTAGCTAACCAGTACCTGCTTGTTAGGGCTTCCCTGGTGGCTCAGTGGTGAAGAACTCACCTGCCAAGCAGAAGATGCAGGTTTGATCTCTGAGTTGGGAAGATCCCCTGGAGAAGGAAATTCAATCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGAGGGCTACAGTCCATGGGGTTGCAAGAGTCAGACATAACTTAGCGAGTAAACAACAACCTGCTTATTAGAGAAAGGGTCATCACTGTGACCCGAGTGACATCCCCGAGCCAGTTTCCAGGTTGTCTCTAGGCTTGTTGGTTAATGGGTGCATAGAGCATCACCCCAGAGCGTGGTGGGCACAGCTTCTTAGAACATGCTCCGACCTCATGGCTGCATGGGCGTCCACTGTGCAGTGTTGGTTGCCCCACCTCAGGACTCGGGTGTCCCTGCTCCCCCCTGTTACACGTGGTTGTGGATGAGCAGCCTGGGCCTGTCCCCCTGACTCCTGGGGTGAGTCTCTGAAGTGATGTGGTGCCTCCAGGGCATGCAGTGGTCATTTCCCAAGGAGTCCTGCCCGACAGCCATCAGAGAGACAGGTCTGTGGGTGTAGAAGCTTGTTGTTCCACGTCACTATCAGGAAAGTGTTCTAGGTCTCACTGCCAATGTGATGGACATGTCCTGGCATTCCAAATGCAGTGGCTGCAGAGAACCCAGTGGGAAATGAGGCTGAGGGTCAGCTTCATTCCAGGGACTCTCAGGCGGCGGGACTGAGGCAGTCATCAGGGATGCTAGATCCCGAGGCCAGTGCCATGCGGCCACAGGGAAGAAGCTGTAGCTTGACCCTGGATGACAGAGTGAGCTTTCTCCCACTGGCCCCCGGAGGCTGGTGGCGAAAGGCCCCTTCTGTGCCTGGCCTGGATGAGGGGGTGCTTGGCAAGAGCAGACACACACACATCTCAGGGACCGTGGGCTCAGAGAGGCGGAACAGCGCCCGAGCACCTGGAGTGTGTTGATGAAAGCAAAGGTGCTCAGAGGGAAGCAGGAGAGGGCACCGGGGGCCTCTACTGGCACAGGGCGCCTGGGCCCTGACCCCTTGGTGAAGACCACCTCTGGGGGCTGAGCCTCCCCGGCCAGTGGCCCAAAGTGCCCTTCACCCCCAATGTCTCCCATCAG
Seq C2 exon
ATGTGGATGAATGTGCCACGGGCCTGGCCCAGTGTGCACACGGCTGCCTCAACACGCACGGCTCCTTCAAGTGTGTGTGCAATGCGGGCTACGAGCTGGGTGCTGATGGCCGGCAGTGCTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839:ENSBTAT00000027771:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAACCCATGCGCAGAC
R:
GGTAGCACTGCCGGCCAT
Band lengths:
246-1706
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development