RnoINT0081761 @ rn6
Intron Retention
Gene
ENSRNOG00000000156 | LOC100911486
Description
multiple epidermal growth factor-like domains protein 6-like [Source:RGD Symbol;Acc:6492904]
Coordinates
chr5:171553803-171554745:+
Coord C1 exon
chr5:171553803-171553925
Coord A exon
chr5:171553926-171554622
Coord C2 exon
chr5:171554623-171554745
Length
697 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
3' ss Seq
TCCCTGTTTCTCCCTTGCAGATG
3' ss Score
14.52
Exon sequences
Seq C1 exon
GGAGAAGCCCGTGTGCAGAAGGCAATGGTGGCTGTATGCATATATGCCAGGAACTCCGGGGCCTTGCCCACTGTGGCTGCCACCCCGGTTACCAGCTTGCTGCAGACCGCAAAACCTGTGAAG
Seq A exon
GTAGCATGCTTTGTCTAGCCCAGCATCCCTGAGGCACCTGTTGGATGGGTCTTTGGGTGACCGAGAGTGATGACTAGTCTCCTCTCCTTGACAGTGGGTGGGAGGGAGGGAGGCACCCAAGGAGCTGTCTACAACCCAGCAGTGTTTCTGCAGAAGGGAGAGAACTCGGATTTCTGCCTTAGACATACTTCCTATATTGTCCAACCAGCACCCAGTCCTTTAGGGGGCAGGAGAGATAAGCAAGGGGGAGGGGAAAAGGGCCACCTATACACCCCAGAAAGTATCCCAGCGAGTCAGTGGGGAAGTGAGTAGCTACACACCCATTTGTACAACAGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCAGTGACTGTTCTTCCAGAGGTCCTGAGTTCAGTTCCCAGCAGCCACAATGGTGGCTCACAGCCAGGTGTGATGGGATCCGATGCCCTCTTGTGGTGTATCTGAAGACAGCTACAGTGTACTCACGTACATTTAAAAACAAAGAAAGAGAAAAGACCCCTCAATATGAAACACAACTTCGGTCTCTTCCGTCCCCTGTCTGTGCCTGGCAGGTATTGGGACAGCATGCTGTCATGCAAGCCAGGAAGCTGTTAATGTGCCCAGGGACATCAGCCACCACCACGTTCCCACTGTCGGGAGCCCCTAACACCCCTTCCCTGTTTCTCCCTTGCAG
Seq C2 exon
ATGTGGATGAATGTGCTTTGGGGCTGGCCCAGTGTGCTCATGGCTGCCTCAACACTCAGGGATCCTTTAAGTGTGTGTGCCACGCAGGCTATGAACTGGGCGCCGATGGCCGGCAGTGTTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000156:ENSRNOT00000000169:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGCCCGTGTGCAGAA
R:
GGTAACACTGCCGGCCATC
Band lengths:
246-943
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]