BtaINT0092613 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001932 | MGC142781
Description
Bos taurus carnitine O-acetyltransferase (CRAT), mRNA. [Source:RefSeq mRNA;Acc:NM_001075587]
Coordinates
chr11:99579020-99579796:-
Coord C1 exon
chr11:99579661-99579796
Coord A exon
chr11:99579083-99579660
Coord C2 exon
chr11:99579020-99579082
Length
578 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
GCCCTCTCCCCCTCACCTAGGAA
3' ss Score
9.11
Exon sequences
Seq C1 exon
GATCTACGGGCAGGCTTGTGCCACCTACGAAAGCGCCTCTCTGCGCATGTTCCACCTGGGCCGGACTGACACCATCCGCTCAGCCTCCATGGACTCACTGACCTTCGTCAAGGCCATGGATGATCCCAATGTGACG
Seq A exon
GTGAGAGGTCGGGGGCAAGGGTGGGAGAGCTGGGTTCGAGCCTTTCTCTGTTCCTTCTCCTTCTGTCAATGTACGTTGAGCACCTACTATGTTCCAGTCCTGTGGTGGACCCTGGGCATCTCATGGAAGATGGAGCTATAAATTTATTGGTGCGGAGCTTTCTGGCTGCCAAAGAGAAAAGGAAACTCCAGTGGATCCTTGAGCAACTTGGGGGTTCGGAGCACCACACAGTTGAAACTCCCCGTGTCCCTTTATAGTCGCTCTCTGTGTCTGTGGTTGTGCGTCTGCAGGTCCAGCCCTCCATGGGCTGTGTTACACTGTTGTGTTTTTTAACAAAAGTCCACATATGGGGTCGCACGGAGTCGGACTCGACTGAAGCGACTTAGCAGCAGCAGCACCGAGTTTAAACCGAGTTGTTCAAGGGTCAGCCACCAGCAGTGAGCACTTGCCCTGTGTCAGGCCTTGGCTGGGGACTGGCCAGTCTGTGCTCTCAGGGAGAACAGAACCTGGAGTGGGCAGTGGGCCCCTGAGGGGGGAGCAGGGACAGGAAGCGTCAGCGCCCTCTCCCCCTCACCTAG
Seq C2 exon
GAACATGAGAAGGTGGAGCTGCTGCGGAAGGCCGTGCAGGCCCACCGAGCCTACACCGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001932:ENSBTAT00000002513:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=FE(7.7=100)
A:
NA
C2:
PF0075515=Carn_acyltransf=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTACGGGCAGGCTTGTG
R:
CGGTCGGTGTAGGCTCGG
Band lengths:
198-776
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development