DreINT0051746 @ danRer10
Intron Retention
Gene
ENSDARG00000098782 | cratb
Description
carnitine O-acetyltransferase b [Source:ZFIN;Acc:ZDB-GENE-040912-162]
Coordinates
chr19:19251050-19251329:+
Coord C1 exon
chr19:19251050-19251185
Coord A exon
chr19:19251186-19251266
Coord C2 exon
chr19:19251267-19251329
Length
81 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TCTGTTTGCATCTATATTAGAGG
3' ss Score
5.15
Exon sequences
Seq C1 exon
AGTTCACAATGAAGTGTGTGCTGCATGTGACATTGCTTCTCTGAGGATGTTCAGGGGAGGACGAACAGACTACATTCGCTCTCCAACCAATCAGATGCTGAGCTTCATACAGGCCTTTGATGATGTTGCCGTTTCT
Seq A exon
GTGAGTGATTAGAAGACCAAATAAGATGTTGTTATTGAGCAACACTGATCAAGTGTGTATGTCTGTTTGCATCTATATTAG
Seq C2 exon
AGGGAAGCCAAAATACAGCTGCTCAGAGAGGCTGTCAATGCATATAGCCTCCTCACAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098782:ENSDART00000172412:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=FE(7.7=100)
A:
NA
C2:
PF0075515=Carn_acyltransf=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTGTGTGCTGCATGTGA
R:
GCATTGACAGCCTCTCTGAGC
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]