BtaINT0092622 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001932 | MGC142781
Description
Bos taurus carnitine O-acetyltransferase (CRAT), mRNA. [Source:RefSeq mRNA;Acc:NM_001075587]
Coordinates
chr11:99580156-99580715:-
Coord C1 exon
chr11:99580615-99580715
Coord A exon
chr11:99580276-99580614
Coord C2 exon
chr11:99580156-99580275
Length
339 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
GACCCTCACATCCTGTGCAGGAA
3' ss Score
9.01
Exon sequences
Seq C1 exon
TTCATCGTGGCCGAAGATGGCGCCTGTGGGCTCATCTACGAGCATGCGGCAGCCGAGGGACCCCCCATCGTCTCCCTCTTGGACCACGTCATCGAGTTCAC
Seq A exon
GTGAGTGTGGGTCTCCCACTCTCCAGCCAGTTCTCCAGCTCCTGATGACAGGTGACACAGAGGTGACAGACGAGCTCTCAGAGGAGGAATGGCCTTCTCCCTTGTGCTGGGAATCTGTGCTACTTCAGAGGAAGCCAGAAGGGGGCGTGGGTTTCAGAGTCCATCAGAGCTGGGTTTGCATTCTGGCTCTGCCATTTCTCAGCTCGATGACCGTGGACAAGTCCTTTCTCCTCCAAGAGTCTCCCTGGACTGGCCCCCTCCTCCCCATTGTAATCCCGGGGATAGACCCAGGCTCTGGAGGCTCCTGATAGGAGCCTGAGACCCTCACATCCTGTGCAG
Seq C2 exon
GAAGAGGCCAGAACTCGTGCGGTCTCCCATGGTTCCCCTGCCCATGCCCAAGAAGCTGCGGTTCAACATCACGCCTGAGATCAAGAGTGACATTGAGAAGGCCAAGCAGAACCTCAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001932:ENSBTAT00000002513:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=FE(5.7=100)
A:
NA
C2:
PF0075515=Carn_acyltransf=FE(6.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAAGATGGCGCCTGTG
R:
GAGGTTCTGCTTGGCCTTCTC
Band lengths:
206-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development