RnoINT0041812 @ rn6
Intron Retention
Gene
ENSRNOG00000018145 | Crat
Description
carnitine O-acetyltransferase [Source:RGD Symbol;Acc:1303031]
Coordinates
chr3:8971262-8972564:-
Coord C1 exon
chr3:8972464-8972564
Coord A exon
chr3:8971382-8972463
Coord C2 exon
chr3:8971262-8971381
Length
1082 bp
Sequences
Splice sites
5' ss Seq
TACGTGAGT
5' ss Score
7.77
3' ss Seq
AGCCTCCCTGTCCCATGCAGAAA
3' ss Score
7.76
Exon sequences
Seq C1 exon
TTTATTGTGGCAGAAGATGGCTCCTGTGGGATGGTTTATGAACATGCAGCTGCAGAAGGGCCCCCCATTGTCGCTCTTGTGGACCATGTCATGGAGTATAC
Seq A exon
GTGAGTATGCTTCCAGCCTCACTTCCCAGTTCCTAGTGGCAGGTGGCATGCTGGTGACAGACTTGTAGAGAAATGTTATTGTCATTTGAAGAACAGAGTCAATGTGTCTGTCTGTCTATTTTTGATTTTTTTTTTTTTTAAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCTTGGAACTCACTCTGTAGACCAGGCTGACCTCAGACTCAAATCTGCCTGCCTCTGCCTTCTGAGTGCTGGGATTAAAGGTGTGCGCACCACCTCCTGGTTTAGAAGGTTTTTTTTTTTTTTTTAAATATTTTATTTATTTATTATATATTATGATTACACTGTCGCTATCTTCAGACACACCAGAAGAGGGCATCAGACTCGTTTCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTGGGAAGAGCAGTCGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCAGAAGGTTTTTTTTTAAAGGTTTGTTTCCACATTTTTTTTTTTTTTGGGTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCATGCGCTCTACCACTGAGCTAAATCCCCAACCCCTTGTTTCCACATTTTGTGTATATGGCTGCTTTGTCTGCTGTGTCCCTGCCCACCAGGACCTGTGGAGGAGCAGAGCAGCCAGCACTGCTGAGCCGCAGGAAGCTGCAGAGCTGTGGCGTTTTGAAATCTGCCTCTAGCCCTACCTTCCCAGCTTTGTGGCTTTGACCAGGGCTGTTTCCCTCTGGCCTCTTCTTTTTGTTTTTAAACAGAGTCTCACTATGGCTTGATGGCCTACAATTCCCTAACTGATCTAGGCTGGCCTCAAACTCAGAATTCACCTGCCTCTGCTCCTCTAAGGGGCAGGACTGCAGGTGTGCACCACTATACCTGGCGTCCATCTGACCTTGAAAGCTAGAGTGCACCCACAATCTTGGAACCCCTGAGGTGGGACTCCTCTTCCCACCTCAGTCTCAGGGACACACTCGGGCTTCAATGACACCGGCATGAGCCATGAGCCTCCCTGTCCCATGCAG
Seq C2 exon
AAAGAAGCCTGAACTTGTGCGGTCCCCTATGGTACCCCTGCCTATGCCCAAGAAGCTGCGGTTCAACATCACACCTGAGATCAAGAATGACATAGAGAAGGCCAAACAGAACATCAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018145:ENSRNOT00000065128:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=FE(5.7=100)
A:
NA
C2:
PF0075515=Carn_acyltransf=FE(6.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGATGGCTCCTGTGGGAT
R:
TGCTGATGTTCTGTTTGGCCT
Band lengths:
209-1291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]