BtaINT0093661 @ bosTau6
Intron Retention
Gene
ENSBTAG00000044074 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr13:23119384-23121498:+
Coord C1 exon
chr13:23119384-23119477
Coord A exon
chr13:23119478-23121402
Coord C2 exon
chr13:23121403-23121498
Length
1925 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
ATATATATTTTCTCTTTTAGAAA
3' ss Score
10.3
Exon sequences
Seq C1 exon
TGCTCAGTTTGCCGGACTGCTTTGTGAAGAAGAAGGTAATGGTGCAGATAACGTCCAATATTGTGGCTACTGTAAATACCATTTTAGTAAGCTG
Seq A exon
GTAAGAATCTGTCTTGAATTTAATTTACGATTATAATAATTAGGTTTGAATTGAGTCTTTATAAGGCATCCATTTTTGGGGGGTTGCTTTTGCTCCAGATTGAGTTTCTTAGTGTGTTGTTTGTTGGGAATTAAAAGCTGTAGTAGTTTTTTTTTTTTTTTAATTGGAGGTTAATTACTTTACAGTATTGGTTTTGCCATACATCACCATCAAGCTGTAGTAGTTTTAGAAGATTTTGCTTTGCTTGAGTTCATTTACAAAGGTGACTGTTCTAAAATATACTACTTTAGAATATATATTAATAGTTAATAGTAAATGTTGGTATCCATTTAGTAGAAAATAAAAATGTGGACATTTGATTACGTAATTTGTGATTCCCTGTCACTTTGTTTCATATCTTTTTGCTTTATTACTGTTACTAGTTTTATTACTTGTTTCATTTTTATTTGCTTGGAGGATAGTAACACTGAAACAAGGCTCTTTTGTAGCTTCTTCATTAAAGGTCTTCAGAAAGAAATATTTAAATACAACTTTGGGAATATTTTAGATTTGATTAGTCTTTACTGTCACATAGCATGGATAAGTTAGTACTATTTGATTAATCATTGTATATTCTGTGTCTGTGTTCCTTTGAAGGATCAATATTTCTTTAATTCCCCATTGTCTGTTTCTCAGTCTTTAGTTGATACCAGGTTTGTATACTGAAAATTAAAGGCTTCTTTGTTTTTCTTTAGTGTCTTCTTGTTATTTTTTATTGTTCCTTTTCTTCTGTGAATAGGGCTGTTTCTTTTTAGAAAAGGAACTCTTTTTTATGAAATGAGCAGCTTATGACTCCAGTATTTTGGCCCTTGCATATAAAATATTGAGAGTATATATGTATTATTTGATATTGAAGATACCAAATAACATATACTTACTGATTTATTTTTTTAATGACTGTCGAAGAACATCAAAGTCTTCTAGGAGAAATTTTGAGATAGTAAAATTGAAAATTCACTTAGGATATTAAAAGCATATTGGAATCTTCATTTTCTAAATCAGAGATAATATAGATAAAATATAGAAATAAGGAGAATGGGTTTTGGAATTTGTGCAAATAGAATTTTTTCATTGTTATTAATGTAATGTTATCCTATTTGGTGACTGGGGAAAAGTCTGTTTAATAATTTAATAAGATTGTATGAGCTCTATGTTTGCAAGGAATTTGATCATCTTTTATAGTCGTTTTTATCTAGCTTAATTAGTTATGGTACCACCAAGTTTTAACACCTGAAATAACTCTCACTGTCATACTTTATTATAAATCTGTGTAAGTCTTTTAAACAGAAATGTGTGTTACTTTTAGTATTGCTTTGAAAAATACATGAGTCTAATGCTGACATTTCCTTTTTTTCTCTATATGAACTACAGAGACAAATTTTTAGAAAATAGTATGCCTTAATACTGAAAGTGTGAGATTAAAAAGCTTCTTACTTTTCCTACTGGCATAAAGTAACTCTTAAAAATTTTTCTTTTCTTCTGGTTTTGGCATCCTTCTTCAGTATGGTATTTTCTATTTTTTGTTGAAATATCTTTTATATTTTAAAGCAGACATTGAAAACTATAGTTGATCTCTGTAATGAGGTGGTTTTATAATAAAATGACAAATAACCACTGCTTATTTGAAAATATTGTCTGTTTTCACACATTTTAATAAATGTACAAAAATATGGCATTAATGTTAGGTTAAGGGTTATATTTTCCTTTATAATGAAATAGATAATATATGGATTGTGTTGAATTGGATTATGTAGTTGGAAATAGCCTTTTTTTTTCTTTCGGTAGACATTTTAAAATATTTCACACTTGAATTGGTTTTAACCTAACAAAAAAGATTTAAAACTTTATATACATATACTTATATGTATATATATTTTCTCTTTTAG
Seq C2 exon
AAAAAGAGCAAACGGGGATCTAATAGGTCATATGATCAAAGTTTAAGTGATTCTTCCTCTCACTCTCAGGATAAACATCATGAGAAAGAGAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044074:ENSBTAT00000061645:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.781
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTTTGCCGGACTGCTTT
R:
TCTCTTTCTCATGATGTTTATCCTGA
Band lengths:
183-2108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development