GgaINT0102634 @ galGal3
Intron Retention
Gene
ENSGALG00000007928 | MLLT10
Description
NA
Coordinates
chr2:17908236-17910470:-
Coord C1 exon
chr2:17910377-17910470
Coord A exon
chr2:17908332-17910376
Coord C2 exon
chr2:17908236-17908331
Length
2045 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
AATATGTTTTCTCTTTTTAGAAA
3' ss Score
9.89
Exon sequences
Seq C1 exon
TGCACAGTTTGCAGGACTTCTTTGTGAAGAAGAAGGCAATGGTGCAGATAATGTCCAATACTGTGGCTACTGTAAATACCATTTTAGTAAGCTG
Seq A exon
GTAAGTAATGGTTAAATTCTGTACATTAATGATAGTAACTTGTTTTTTCACTCTGAATTGCTATTAGCAGTAGGGATAATATTTTCATCTGGCTCAGTAGATTTTTTTTTTTTTTTGTAGCTTTTGATTCTAGATTAAAATGTTTTTGTTTTCTAAATGTGTATTTTTTCCCTCTGGCAGAAATAGCACGTGCATCTAGTTTTTATTTGTATTTTTTGTAATTAGTAGTTGAAAATACTTTTTCCTTGCTATTCTGTATATTGGATTATAAAGGCAGCTTCCATTTCTTTCTCCATCTGTGTGTCATTCTGTTTTGCTGTCGTTCCTTCTGTTCTGTCTTCACTGTATAGCCAGTGGATTTCCTACTCATTAGTTCCTTTAAACACAACCTCAAGAACATACCTTGGGGTTTGATCTTTTTTTTTAAAGAAAACATAAAGTTTGAAACTTCTCAGTTATTTCAACAGCTCTTTGTGTCAGACTTCTTGAGCTTTCCCTTTAACACCTTTTTGGCAGTTCCAGATATGTGTGTATGTATGTGGACTTAAAGGATTAGAATCATTTGAGTTGGAAGGGACCCTTAAAGGCCATCTAGTCCAACTCCCCTGCACTGAACAAGGGCACCTACAGCTATATCAGGTGCTCAGAGCCCTGTCTGGCCTGAACTTGAGGGTCTCCATGGACAGGGCTTCTGCCACCTCTCTGGGCGAGCTGACTTAAATGGTTTAGTGATATTTTAAAAACATTATTTACAAACATTGACATATGAAAATTAAAAAATATAGACTGAAATTCATATGTTGCTGTAAATACAGTGAAACTTGTAGGTTACTTGTTCTCACTGCTGAAAAGCTGAATATTTTGGAGACTTACATTGCAGTGAAGTAAAAACAGGGCCGATGAACCTTTTTAGGTTTCTAGAACATAAGCTCAGGGAGGTTAACTCTGAATATTGATGAATTTGTTTCATAATGAAGATAAGTCAGGAACTTCTAGACTTGAATTAATCTATTTTTTTTTTTTTTTAAATTTAAATCTTGAGCTAAGTAAATGAAAAGAACAAAAATTATGCATTACTTAGCGGTGAAGGCAAGCTCTACACTTTTATACATTTGATTTTAATGTGCCAGTGCAGCTGTATTTGAGAACGTGTACAACTGTTTGAAACACAAGGTAATAGTAAAGACACAGAATCATATTTGACATGATAGCTTACCACTGCAAGTGGTAAGAACAGTAAAGGCTGGAAAGATCATGCTAGTGTTCTAATGTTTCTTTAGAGATATCAGGCATCAACAGTCCCAATAAATACAGGTATTTGTTATGTATTACTGAAAATGATGGATGTTATATAACTACTGAAAACATCAGTTGGAAAAGCACTGACTTGAGGTTGTTTATACAACTCAGTTATGAGCTAGCTCAGTTATAATACAGTGACATACGCTTTCTGGGCACTGGCTAGCATAAATATATGTGGCTTCAGAATAGGCTCTTGAACATAATGGAAATACATGAAAAAATTATATGTACTGCTTATGACATGACCGTAGCAACCCATATCCTATTTAGAAAAAAACCCCACAATTTTAAAGAAAATATTGCAGAGAGGTCACTTGAATAATAAATGGTGAAGCCATAAAGCAATTGCCTCATGTTGTGTTTCAGGCATGTGACAGTGTTAGCAATGCAGCTTCTTCATTTGAGCAACTTCTTCATTTGAGCAGCTTCTTCTCTGTTTTATGTTATGAAAACTTGAAAATGTGTATCATCTTTTAACCTTCAGAAGATGATATATCTTTTTTTCTTTGGTAAAAACGTTTTGTCTGGGAGTATGAAAGTCAGTGAAAGGGTAGACATTTTCTGGGTGTACAGTCAGTAGTCTTGTTAATTTTACCAGTGTTAGTTATTTGTCAGGCTTTCAGTATCTGAAGTTTTTTTTTCTTCAAGCAGTAAGGCATTTTATCAGTTGAAATGCTTTCTATTTTTTTAATTTATTCAAATGATTCCTTTTGTATATCCATAAATATGTTTTCTCTTTTTAG
Seq C2 exon
AAAAAGAGCAAACGGGGATCTAATAGGTCATATGATCAAAGTTTAAGTGATTCTTCCTCTCACTCTCAGGATAAACATCATGAGAAGGAGAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928:ENSGALT00000012873:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.812
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=PD(22.9=84.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]