BtaINT0093812 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015962 | MMADHC
Description
Bos taurus methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria (MMADHC), mRNA. [Source:RefSeq mRNA;Acc:NM_001034541]
Coordinates
chr2:46648517-46649142:+
Coord C1 exon
chr2:46648517-46648568
Coord A exon
chr2:46648569-46649082
Coord C2 exon
chr2:46649083-46649142
Length
514 bp
Sequences
Splice sites
5' ss Seq
CTGGTACGG
5' ss Score
8.6
3' ss Seq
TTTGTTTTGTCCTTTCCCAGGAA
3' ss Score
10.53
Exon sequences
Seq C1 exon
GGGAAGAGTACGGCCCTGGGAGCGCTGGAGGCGGCTGTGGCGGCCGCGACTG
Seq A exon
GTACGGACCGTTTCCGCACTCGTTAGTCCCTCCAGATTTGCCCATCTTTTGGCCACAGCTCTCGGTTTTGTCCCTATACTCACAGGGCCCCTGTCGCTGTCCCCGGTCGTCCTGTCAGTCTGTCGTTAGGATCTTTTTCGCTTCCTCAACCTTCATCTTTGCTGGAACCTTTGCTCACAGCTTGTTTAGAACCCTGATCGGTGTTAAAATACCTACTTGGAGCCTCAGATCTCCATCCTGGTGGACAGGCCCTCTTTCCTCCCCCGGATCTAGTCGGAGTTGTCTTCCGCAGACACACCGGGCGGGCTGAGAATTGCAAGGCCTCCTGTGGGCAGCGACTTGTGCCCTGTGGGGGCAGGGGGCGAATTCCGGTCTCCTGGGGTCCGGGGACAGCTTGGGCTTTGGTCCTGTCGCGGAAGAAGGGACACCCAGTAGGCGATGGTGGACATTACCCGAGTGATCTGTTGTTAGAGCTTAATCCGTCACCGGCCTGTTTTGTTTTGTCCTTTCCCAG
Seq C2 exon
GAATAACTTTACAAAAGGGAAGATAATTTCCGTCTGCCCTTTCCGCCAGAAATGGCCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015962:ENSBTAT00000021223:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]