RnoINT0093033 @ rn6
Intron Retention
Gene
ENSRNOG00000004740 | Mmadhc
Description
methylmalonic aciduria and homocystinuria, cblD type [Source:RGD Symbol;Acc:1303272]
Coordinates
chr3:35800982-35801614:-
Coord C1 exon
chr3:35801350-35801614
Coord A exon
chr3:35801039-35801349
Coord C2 exon
chr3:35800982-35801038
Length
311 bp
Sequences
Splice sites
5' ss Seq
CTGGTACGG
5' ss Score
8.6
3' ss Seq
TTGTTTTTGCTCTCTCCCAGGGA
3' ss Score
10.85
Exon sequences
Seq C1 exon
CAAAGACTCAGCTAAGACTGGTGCTGAGTCCTGTAAATATTCCCAATTTGGTCCCACCCCGCCGTGATCCACCCATCAGTTTACCCAATGAAAGACTAGCTCACCTTCTGAAGCCCTGTGATCAGCCTCTACTCGAAGATCGACCGACAGCATCGATGCGCTCGGAGGCAACTACTCAGGTCTGGGCGTCAACAGCGCCTGCCTGGACCGCCATTTTGACAGTGGACGTGTTGAGGGACTGGATCAGCTGGCCGTGTGGTGACTG
Seq A exon
GTACGGATGGTTCCCACCCGCGGTCTCTTCTGCACTTTCACGGGTGACCGTGCCCCTGCTGTCGGTATTGCCCCGGTCCACCCACCTCTGCCCAGGGTTCTTCTGCTCGCGCCCCACACGGCTCCGCCCGAGCCTGCGCTCGGAGCGCAGACCTGCTGGGTTCCGCCCGGCCCGAGTGTTCCCACGGGTTCTCGGTGACGCGGGGCCCGAGGTCTGGCTTTGGGGAGGGACAAGCTAATACTGCCTGGCCCGAACCTCCGTCGGTAGAGCTTGGTCTGTCACTAGCCCGTTTTGTTTTTGCTCTCTCCCAG
Seq C2 exon
GGATACTTTGCAGAGGGGAAAAGTCTGCGTCCGCCTTCTTCACTAGAAATGGCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004740:ENSRNOT00000066058:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCAGCTAAGACTGGTGCT
R:
TGGGCCATTTCTAGTGAAGAAGG
Band lengths:
318-629
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]