RnoALTD0018355-4/5 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000004740 | Mmadhc
Description
methylmalonic aciduria and homocystinuria, cblD type [Source:RGD Symbol;Acc:1303272]
Coordinates
chr3:35800982-35801450:-
Coord C1 exon
chr3:35801350-35801450
Coord A exon
chr3:35801286-35801349
Coord C2 exon
chr3:35800982-35801038
Length
64 bp
Sequences
Splice sites
5' ss Seq
TCGGTATTG
5' ss Score
3.83
3' ss Seq
TTGTTTTTGCTCTCTCCCAGGGA
3' ss Score
10.85
Exon sequences
Seq C1 exon
GAGGCAACTACTCAGGTCTGGGCGTCAACAGCGCCTGCCTGGACCGCCATTTTGACAGTGGACGTGTTGAGGGACTGGATCAGCTGGCCGTGTGGTGACTG
Seq A exon
GTACGGATGGTTCCCACCCGCGGTCTCTTCTGCACTTTCACGGGTGACCGTGCCCCTGCTGTCG
Seq C2 exon
GGATACTTTGCAGAGGGGAAAAGTCTGCGTCCGCCTTCTTCACTAGAAATGGCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004740-0-0,1-0,2-0,3-0,4-0-4/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTCAGGTCTGGGCGTCAA
R:
GAAGGCGGACGCAGACTTTTC
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]