BtaINT0094124 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030876 | MNX1
Description
motor neuron and pancreas homeobox 1 [Source:HGNC Symbol;Acc:HGNC:4979]
Coordinates
chr4:119161840-119164828:-
Coord C1 exon
chr4:119164774-119164828
Coord A exon
chr4:119162001-119164773
Coord C2 exon
chr4:119161840-119162000
Length
2773 bp
Sequences
Splice sites
5' ss Seq
ACTAACTGT
5' ss Score
-20.38
3' ss Seq
CATGGCCTCTCCCACCCCAGCCC
3' ss Score
7.64
Exon sequences
Seq C1 exon
NGGCTGCGTGCGTCCACCGCGGGCATGATCCTGCCCAAGATGCCGGCACATTACT
Seq A exon
AACTGTGAGTACCGCGCAGCCCGGAGCCTGTGGAGCAAGGAGGAAACGGGGCGGCGATGGGGGTGGCGAGCATGGGCAGAAGGGTCTCCCGCGCATCCTCCGCCGGGCATCTCCTGCCCCGGCTCTCTGCCCCGAGCGAGCTGTGGACGCGCCCCCAGGCCGCCTCGGCTCCGCTCGGGGCCTGCGAGGACTCGCGCGGGCTCCGCAGCGTGGGATCGCCAGCGATCGAAAAAATGGCCACGCGCGGTCCTTGTTCTCTTCCTCTCTTAACGGGAAGGGGCAGCTGGAGGTTTAAGACTAAAATCTAATGATTAACTGGCAGGCTAGAGGAGAAGGAAGTGGTGGGGGAAGGCGAGCCGAGTTAGGCGTGCCTTGGAATCAGAGGCCACCGAAACCAGGGCTTTATGCTCAGAGAAACGGACGTGACTTCGGTCCCACATTCTGGGCTCTGGAGAGACTCTGGGTCCCTCCCAGGAGAGGGAGAGCTCCCAGAGTAGGATAGGAGGAATGAGCCTCAAGAGGCTGGAGACGCAAGGCTGGGGCCCTTGTGGGGCTGTGTCCGCCTCAGGAAGGCCCCAGGTCCGCGGTGGGGTGAGGCCCAGGAAGGCGGGTGGCCCGGTCTGAACCAAGATGGCATGCTCCAGCGGGCCGGAGATGCACCCTTCTACTTTGGGGTACCCACTAAGGGGCTTTGAACAGCAGGCGCCCACCTCGAATTCAGGGCACCCAGCACAGCACGAACCCCTCCCCAAGACCGCAGCCGGGGAGGGCAGGGCACCCCCAAGCTTAGAGCGGCCCGACTGTGGGCGGAGAACTCGCCACTCAGACGGGACACCTCTCCGGGGCCTGGGTCTCTCTCTTGGTGCGGGCCGGCCGGGGCCCAGGACTGGAGCTGCCGAGAGTGTGAATCTGCGGTCGGCTTGCTGCACCCAGGCTCGATCAGTGGAAGATGCGTGAGGCTTTACGCTTCGAGCGGCCAAACACCCAAACAAAGAGACCCCATTATTTCCGTCCGAGTGAATTTGTTTAGACTAGAGACATGCAGGTATGGTGGGGGGAATGAAAAAGAAAACAAATAAACACTTGGCAGAAATCAGATTCCTCTGCTAGAAGCGATGGTTGTGACTAAACAGAGAAAAGCTAGGATCCCACAAGGCTGGAGAAGTCACAGCGGGGTGAGAAAAGCCCAGCATGTGCGCTGTTTGCCCTCCACGCCCAGGCCAGCCCGGCTCAGCTCCCAGAAGGCCCTGATATCCACCCTTCCCTTCCATGGGATCACCCCTCCCGGCCCCAGGCCAGGCAGAGGGCAAGCTGGCTCTCACATCCACAGCTTCAGGCACATCTGAACTGCTGACCCGGGTCCACCAAACCCAGGGAGCCCTCGGGGCCTGGCCTCTGAGCCCAGCAACCCCTTCTGATGAAATGCCACCCAGCCATCTTCCACTCTGACGGCATCGTGCAGCACCTGGCAGGCTTAGTCTCCCACCATGGGGGGCCCGGGGGGAGGGGTTGTGCACACCGGCTGCCCCCCTCCCCCGAACTGGGTTCCCTGGCCACCCCGCTGTTTTCTCAGGCCTGCATGGAGCCCAAGGCTGCCCAGAAAATCGACTAAAACCCCATCGCTTTGCCAACACGCTTCGTGCATTCTTACTCCTAATCTTGACCCGGAGGTAGCTAATTAAAACCCAGCCAGCTTTAAGTTCAGAGAAGGAATCTGAACACCGAGTCCTAAAGGGCAATACGAACAGGCAAGGATGCTGGAATGGGTTCTCACTGGAAAACCTGTTTGGTTTCAACTGGTGTCTCAGCCATCGGATGGCATTTCCCAAATGGTCCCTTCAGAGCCAGCGTTTTAATTAAAGTTCTAATGTATTGTCAAGTTGGGAATTCGGGGCCTTGTTTAACTAAAGCAGGGGGCGTGGGCCTTCCCATAAAGCAAATTGCCCATCCCAGGGGAGCCTGGGCAGGCCTGCCCGGGGCTGGCTGCTTCTTTCCTTTCTTTTATTGTCTAACACTTGTCAGGCTCCTGGGAAATCAAGGGAAGTCTCGTTTTGAGGTCATAAAATTCTCTGTGATGTAACCGTGTGAAATTATGTAAATAAAGCAGAGAGACCTCCTTGAACACACAGAAAGCCGGATCCCCCTTGGGCCCAGGCCTTTAATTTGCGTAATGAGAATTGTCCTGAAAAGCTTCCAATTGTCCCAGGCTCTGCCGCTGGGGACTGGGCAGCATTGTCAGAAAACACTTTACAGGAGGAACACATGCTTAGGCCCAGGATCTGGCCCTTTTCCTCCCTCCTCCCTTCCTCCTCTTTCTCCCCCTTTTCTCCTTCTGCTTGTTTTGTTTGTAAGGAGGTGGTGGTGGGAATTCTGCACCCGGAAGAAGCAGGAAGTGATTCCCAGGGCCTGTGTGGGTTTGGGCCTGAGTTGGGGGGGAAGGCGGATGGGCAGAGCATGCAGGGGGTGGTCTCTGGGCTTCTGCTACTTGCCTTTCTGTGCACCTGCTTCCCACCTACAGGACCCGAGGGGGCAAGCCGAGCCTGGTCGATAGGACAACAGGCCCTGCCTGGGATGAAAAGATTGGGTCTCATTAAACCCAGATGGTGTGGGTCCACCTGGCGGTGGGGTCCGGGGCTCCAGGGCCTCCCTGGGGAGGGGGTGCTGACACTGAAGACTGAGCAGCAACCCTGCAGGGCCCGAGCAGTGGGCAGCGGGGTATGAGGGGCGCTGCTGGCCCTGGCTTGCTCCAGCCTCATGGCCTCTCCCACCCCAG
Seq C2 exon
CCCAGGCGCAGTCCAACCTGCTGGGGAAGAGCCGCCGGCCCCGCACCGCCTTCACAAAAAAGCAGCTGCTGGAGCTGGAGCACCAGTTCAAGCTCAACAAGTACCTGTCGCGGCCCAAACGCTTCGAGGTGGCCACCTCACTGATGCTCACCGAGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030876:ENSBTAT00000006046:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=77.8),PF088806=QLQ=WD(100=51.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]