BtaINT0094718 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009924 | MR1
Description
Bos taurus major histocompatibility complex, class I-related (MR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001190298]
Coordinates
chr16:63656009-63659861:+
Coord C1 exon
chr16:63656009-63656110
Coord A exon
chr16:63656111-63659802
Coord C2 exon
chr16:63659803-63659861
Length
3692 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
ACAAACTCTTTTTCTTTCAGGGA
3' ss Score
10.55
Exon sequences
Seq C1 exon
AATCGGAAACTATACTTCTCGTGGTGAAAGCTGTTGGGTTCATTGTCCTCGCCATTGCCCTGGCTGGAGTTGGCATCCTAGCCTGGCGAAAGAGGCCCCGAG
Seq A exon
GTAAGAGGCGCGTGGAAGGATCCTGGGGATGAAGACTGTCTCTCCACAGCTCCAGAGTTTTATTTTCTGCACCTGCTACTCCAAGCTCCCTTTAGAACTGGGTTTGGCCTCATTTTGTACCATAGGACCCGAAACACCTCTCTCAGCATATAGGGAACACACACCATGGATGATGCTTGCAAGGAGAGTGGTCTGTTTCCTAAGTGGTGCCTGATGTCAACAAAGTGGTACAGTTCCTGTCCGGGTGGACTGTCCTTTGTGCAGTTGGTTCAGAGAAGATATGGTGACATTGATTTGTCTTTTTCCAAATGATCTCATTATTGTTAATTACTACTGACCTTTTAAAAATAATTTATTAGAATTGGAGGCTAATTACTTTACAATATTGTAGTGGTTTTTGCCATACATTGACATGAATCATCCTTGGGTGCACATGTATCCCCCCAGTCCTGAACCCCCCTCCCCTCTCCCTCCCCACCCCATCCCTCTGGGTTGTCCCAGAGCACCAGCTTTGAGTGCCCTGCTTCATGCATCTAACTGACACTAGTCATCTATTTTACATATGATAATATACATGTTTCAATGCTAATCTCTCAAATCATCCCACACTACTGACTTTTGAGAGGATTTTGTCCTTTGTTTTTCCCATCTTGACAAACATTATTCTGTCACAATCACGTGGAAGTCCTTTTTCTTCTCCTTTTTTTTTTTTTTTCTTTTTTGGTCTGCACTGGGTCTTTGCTGCAGCACCCAGACTTTCTCTGGTTGCAGCACTTGGGCTCAGTTGCCCCGTGGCATGTGGGATCTCGTTTCCCGACCAGAGATTGAATCTGCATTCCCTGCATTGAGAGGTGGATTTTTAATCAGTGGACCACAAGGGAAATCCCTGCTTTTTCTTCTAATTCATCTTGCAACCCATGAAATGTGGAAGAGTAGATACCTTTAGAAAATGGAACTCAGGGTAAGAAAAAGTAAAAGGAGAAATGAGACATATAGGTTCTTGGTACCCAGGGAAAAACTTCATCCATTCCATAAACATGTATTAAATGCCTCCTGTGTTCTAGGGATTGTATTAAATGCTGGGCTATCACAATGCAAAAGACAGACACAATCCCTGTTAGAAAGCTTACAGTCTAGTCTTGCAAAGGTCATTTCCCACCTCTGGGTTCACTAGGTGCTCAAGTTGATAAGAGCATAATATTGATGAGCCCTGGATTATGGGTTTGAACCCAGTTGTGGGCCAGGAATTTGGCTGTACTTCATAGCCATAGTATTACCCAATTCAGGTGATACTATTCAAAGTGTGCTATTAGTTAAACGAAACACCAACCCTGTACAAGAAAATTAACTCAGAGTTAATGGATCATTGTTTTCTTTATAAAAAGTATAGTTCTAACCCGAATATAACAAGTGATAACCGCTGAAGCAAAAAAAATTTTTTTCTTCTTTTCTTATAATGATACACCTCTCTCAAGGATGATATGCACTGTGATTTCCTGCTCTTTTATCTTGTGGAGTTTGTGAATTTGAGTTGAAGTTTCTCAAGTAGTAAGAGAATCTTGACAAGTAGGCTAAAAATGTTTCTCAGAGTTTCAGTTCAGTTCAGTTCAGTCGCTCAGTCGTGTCTGACTTGTTGCGACCCTGTGGACTGAATCACGCCAAGCCTACCCATCCATCACCAACTCCTGGAGCTTATGCAATCTTATGTCCACTGAGTCAGTGATGCCATCCAACCATCTCATCCTCTGTCATCCCCTTCTCCTCCTACCTTCAATCTTGACCAGCATCAGGTCTTTTCCAACAAGCCAGTTCTTCCCATCAGGTGGCCAAAGTATTGGAGATTCAGCTTCAGCATCAGTCCTTCCAATGAATATTCAGGACTGATTTCTTTTAGGATGTCCTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACGCCACAGTTCAAAAGCATCAATTCTTCAGCGCTCAGCTTTCTTTATAGTCCAACAACATCCATACATGACTACTGGAAAAACCATAGCTTTGACTAAATGGATCTTTGTTGGCAAAGTAATGTCTCTGCTTCTTAATATGCTGTCTAGGTTGATCATAGCTTTTCTGCCAAGGAGCAAGTGTCTTTTAATTTCATGGCTGCAATCACCATCTGCAGTGATTTTGGAGCCCCCCCCAAATAAAGTCTCTCACTGTTTCCACTGTTTCCCCATCTATTTGCCATGAAGTGATGGTACCAAATTCCATGATCTTAGTTTTCTGAATGCTGGGTTTTAAGCCAACTTTTTCACTCTCCTCTTTCACTTTAATCAAGAGGCTCTTTAGTTCTTCTTCACTTTCTGCCATAAGTGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCGGCAATCTTGATTCCAACTTGTGCTTCATCCATTTCTTATGATGTACTCTGCATATAAGTTAAATAAGCAGGGTGACATTATAGAGCCTTGACACACTCCTTTCCCGATTTGGAACCAGTGTGTTGTTCCATGTCCAGTTCCAACTGTTGCTTCTTGACCTGCATACAGGTTTCTCAAGAGGCAGGTCAGGTGGCCTGGTATTCCCATCTCTTTAAGAATTTTCTACAGATTGTTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAGTAAATGTTTTTTTTCTGGAACTCTTGCTTTTTCTATGATCCAACGGATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAATCCAGCTTGAACATCTGGAAGTTTACAATTCACGTACTGTTGAAGCCTGGCTTGGAGAATTTTGAGCATTACTTTACTAGCATGTGAAATGAGTGCAATTGTGCGGTAGTTTGAGCATTCTTTGGCATTGCCTTTCTTGGGGACTGGAATGAAAACTGAGCTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCAAATTTGCTGGCATATTGAGTGCAGCACTTTCACAGCATCATCTTTTAGGATTTGAAATAGCTCAACTGGAATTCCATCACCTCCACTAGCTTTGTTCATAGTGATGTTTCCTAAGGCCCACTTGACTTCACATTCCAGGATATCTGGCTCTAGGTGAGTGATCACACCATCATGATTATCTGGGTCGTGAAGATCTTTTCTGTATAGTTCTTCTGTGTATTCCTGCCACCTCTTTTTAATATCTTTTGCTTCTGTTAGTTCTGTACCATTTCTGTCCTTTATTGTGCCCACCTTTGCATGAAATGTTCCCTTGGTATTTCTGATTTTCTTAAAGAAATCTCTAATCTTTCCCATTATGTTGTGTTCCTCTATTTCTTTGCATTGATCACTGAGGAAGGCTTTCTTATCTCTTCTTGCTATTCTTTGAAACTCTGCATTCAGATGCTTATATCTTTCCTTTTCTCCTTTGCCTTTTGCTTCTCTTCTTTTCACAGCTATTTGTAAGGCCTCCTCAGACAACCATTTTGCCTTTTTGCATTTCCTTTTCTTGGGGATGATCTTGATCACTGCCTCCTGTACAACATCCTGAAACTCCGTCCATAGTTTTTCAGGTATTCTGTCTATCAGATCTAATCCCTTGAATCTCAGAGTTTACTGAGCACTGTATAATTTATTTTTGAGCTATAAGGAAAATGCACACATATCTGACTACAAACTCTTTTTCTTTCAG
Seq C2 exon
GGAAAAACAAAGTCATCTGCCTTTCTACACCAGAACACTGATGGGAGATGGCTGCTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009924:ENSBTAT00000064417:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development