HsaINT0104900 @ hg19
Intron Retention
Gene
ENSG00000153029 | MR1
Description
major histocompatibility complex, class I-related [Source:HGNC Symbol;Acc:4975]
Coordinates
chr1:181022709-181031074:+
Coord C1 exon
chr1:181022709-181022813
Coord A exon
chr1:181022814-181024360
Coord C2 exon
chr1:181024361-181031074
Length
1547 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
AAAAACCCCTTTCCTTTCAGAGC
3' ss Score
8.9
Exon sequences
Seq C1 exon
AATCAGAAACTATCCCTCTTGTGATGAAAGCTGTCTCTGGGTCCATTGTCCTTGTCATTGTGCTGGCTGGAGTTGGTGTTCTAGTCTGGAGAAGAAGGCCCCGAG
Seq A exon
GTGAGAGGCACATGGAAGGGATCCAGGGGGCTGCAGACTCTCCTGCATCTCTCCAGTTTTATTTTCTGCACCTGCTGCTCCCTCCTCCATTCAGAAATGGCTTGGCTCTCAGGCTGGGATCACAGAAGGACCTGGGACAACCCTCCCACCATGTAGGGGACACAAAGCATGGATAAAGCTTACAGGGAGAGTGGTCTCTTTTCATAGGTGATGCCTGACATCAACAAACTAGTACATCTGTCCAGGGGAACTGTCCCCCTAGAAGTTGGGTCAGAGAAGATATGGGGATCTTGATTTGTCTTTTTCCAAACCATCTTTTTATTATTAATTACTATTGACTTCTGGGGCAGTGTCCTTTGTTTCAAGACTTCAGTCAGTTTTCCCATTTTGACCACCATTCTTTCATCCCAAGCATATGAAAGTCCTTTTCCTTGTAAATTCATTATTCAAAACATTAAATATGTAAGAGTAGATACCTTCAGGGAATGGGACTTAGAGTAAGGAAAAGGGGAGGAGAAGTAGGAGATATATAGGCTCTTGATAATGTGGAATAACATAAATTCATTCAGTAAGTATACATTAATGACCTACTGTGCTCCAGGCACTGTACTGGTTGCTGGGATATAACAATGAACAAGACAGATACGATCCCTGTTTTCATAGAGCTTACAATAGAGCCTGGTAAGGTTATCTCCTGGCTCTGGCTTCACTAATTGCTCAAATTGATCACAGGATAGTACCGATGAGACCATGCTTTGAACCCAAAGTGGACCAGAAGTTTGGTTTTCCTTCATAGACATAGACCTCAACTCCAATTCAGGTGATAACTGTACAAAAGCATGTTGTTAGATCAAAGTAAAACCAACCCTTTTACTAGAAAATCAGCTCAGAGGCCGGGCGTGGTGGCTTACAACTTGTAATCCCAGCACTTTGAGAGGCCGAGGCAGGCGGATCACTTGAGGTCAGGAGTTCGAGATCAGCCTGGCCAACATGGTGAAACCCTGCCTCTACTGAAAATATTAAAAAAAAAAAAATTAGCTGGGCGTGGTGGCACATGCCTGTAATCTCAGCTACTCAGGAGGCTGAGACAGGAGAATCGCTTGAACCTGGGAGGCGGAGGTTGCCGTGAGCAAAGATCGCTCCATTGCACTCCAGCCTGGGCAGCAAGAGCGAGACTCTGTCTCAAAAAAGAAAAAAGAAAAGAAAAGAAAAGAAAATCAGCTCAGAGAGTTAATGGGTTGTTAATGTTTTCTTTATAGATAAAGTACAGCACTAATCCTAATCCAATAAATGATAGTGAAACAAACAAAAAATTTTTTTACAATGACATCCCTCTCTCAATAATTATACAGACTGTGAGTTCCTGCTTTTTATCTTATAGAGTTTACAAATTTGAGCTAAAGTTTGTCAAGTACTAAGAGAATCTTGACAAAGCAAGCTAAAACTGTCGATGCCTGTTTCTCAGATTTTGCTGAACACTGCATACTTTATTTTTGAGCTGTGAGGAAACATTCTTGTAATCTGACTAAAAACCCCTTTCCTTTCAG
Seq C2 exon
AGCAAAATGGAGCCATCTACCTTCCAACACCAGATCGATGATTGCAGATCCCTCTTTTCCAGTTCTCCTTCCTCTAGGAGCCATGTTATCCTCTGTCCCCCATAGAGTCAAGCCTAGTGCTTGAAGGTCCTGACGACACCCACAACATACATGAGAGTAATGGGATTGAGCATTTATGGCAGCAACAGAGGAGCCACAAAATGTTCTTTGTTCTTTGGCTCCAAAAAGACTGTCAGCTTTCAGTCTCTTTTGATGGACTGTTTTATCAGAGTTGACTTTAAATACAGCTTGTCTCATGACACAACGCTTCCCTACATTCTATTTGTCAATGATGATTTGCAACTAGTTGGAGATTCTCAGAGCAGGAAGGAATCTTTTCAACCAGAGCAGGAACTGTCTTCTGCAATGCCTTGGACTTGAGCCTCCAGCCTCCACTTGAACACCATGTGAAGGGAACCTCAGTACTTCATAAAATGGCCTTTCTCATTCATCTTTCATGGGAACATTTATTGTACAAGCGCTTTGAATATCATGGGCACCATGACTGTGACCCTACAGGTAGGATTGGATCACTCCATGAGAGTAGCCGGCAGGTTTCTACAATGGCCTGGGAATGGACTGATTATTTTTATACATTTTCTGGCCTGAGAGAAAGCCAAAGTCCCCTGCTGTTCACAGCAACCCTGCCTGGGAGCTTGGAATCTTGGTAATCTGCCCGGTTGGATCTATGGAGGTAGTCTCACCCTTTTTGTCTTTTGTGGGAAATTAAGAGAAATAATTATCAGACATATCATCACCTCCAGTGGAACTACAGAGACCTGGACCCAGCTGCACTATTTTAATGTAAAAATAACAGTATGGCCAGGTGCAGTGGCTCACGCCTGTAATCCCATCACTTTGAGCAGCCAAGGCGGGCGGATCACGAGGTCAGGAGATTAAGACCATCCTGGCCAATATGGTGAAACCCTGTCTCTACTAAAATACAAAAAATTAGCTGGGCATGGTGTTGCGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGACAGGGGAATTGCTTGAACCCGGGAGGCAGAGATTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGCGACAGAGTGAGACTCTATCTCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAACAGTATATTTGGTGTCAGGAGAGGGCTCAATTCTCATTTCTGCCTTTCCTGTGCTGGCTCATGGTAGCTGGGCATGACTTGCCTTCCTACATAGGTTGTCTTCATACATATGCACTGGGAATCAATAAAAGCCCATGGTGAGAATGAACATCCCCTTAATGTTCCTTACTATCCCCAACCCCTGAGGCCTCACCTACTGCCCTGCCATGTGGAGCTACTTGCCCTGGGGCTGCCAGTCACACATTCCTCGGTCCTACTTCTCTGACCCCGTTTGACTCTGCACCTGAGCCCTAATGCTTACTTCAGTGACCTGAACTTTGACAAGTGGCTTTTGTCCTGCACCTCAGGTTTGACCTCTGCTCTCCCTTGACCTTGACTGTGACATTTGACCTTTGGCTTTAATCATTACAGCCTCAGATAAAGGTACCTTCAGCCCGGGCACAGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCTGAGGCAGGCGGATTCCCTGAGCTCAGGAGTTCAAGACCAGCCTGGGCAACACGGTGAAACCCTGTCTCTACTAAAATACAAATAATTAGCTGGGCATGGTGGCATGTGCCTATAGTCCCAGCTACTTGGGAGGCTAAGGCAGGAGAATCACTTGAATCTATAAGGCAGAGGTGGCAGTGAGCCGAGATCACACCACTGCACTCCAGCCTGGGCAACGGAGCAAGACTCTGTCTCCAAAAAAAAAAAGAAAGATACCCTCAGTGTGCCAGGCCTCTAAGAGCTCACCTGCCAGGCTTCCTCCTTGCTCCACTGTCCCATGTAATTCCATATATGAAGCTACCACTGTACATCTCTCTTTTCCGGTGCCTGTTGAGTTGCATAGAAGCACAGTTGTGTTTATTTTGTTTTTAGGGTTGCCATGGGCAATTTCCGTGCCACTTTTAAGCAGTGTTGCACTGTGAAGAGAATGTAGGCAAGTTTATTTCTGGAATGGTTTCTTCTTACAATCAGAATAGTTAGGATGTAATATATTTTTGGGTGGGCATTTAAAGTGAAAAGGTACATATTTACATAGACACAGGTGATAATGTATCTATGTAAATGCCTTTTGATTCTGCAACTGCAGGATACTCTCATCAAAGACACAGATAAAAAGCCTCTGTGTTTCCAAGGCCTTGCCCTACACCTAACACATAATATGTCCAAATGGATGAAGAGGAGGCAAGGACAAGGATGTGATGACAAAACATTCTGTTATGCACTTGTAGCATTTATGTTTCTTCCTGGGGGATTTTATAATACTAAAAGAATCATAATATAAAGAGATGATTAAAAAAAAAATACTGCCGGGCACGGTGGCTCATGCCTGTAATCCCAGCATTTTGGGAGGCCGAGGTGGGCAGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCTGTCTCTACCAAACATACAAAATTAGCCGGGGATGGTGGCGCATGCCTATAATCCCAGCTACTCGGGAGTCTGAGGCAGAAGAACCGCTTGAACCCGGGAGGCAGAGGTTGTGGTGAGCCGAGATCGCGCCATCGCACTCTAGCCTGGGCAACAAGAGTGAAACTCCATCTCAAAAAAATAAAAATAAAATAAGTAAGTAATACCTAAAATTCTGCAACCTTCATTTTACTATAGATGGTTGAAGATTATATTACTTCTTAATTGTTTTAGCCTTGTTATTGCTTCATTACTTCATGGTTGTTGAGTACAGATGCTCAGTAATCATAACCTATGAAATATTTGACACCATGATCTAAACATTAAAAACAAATAACTGTGCTATTGCCACAGCTATGTTTTGGCTTTGAATTTTCTTTACTGAATATTTTGGATCAAGAACACTAGATGAGAAACCTGTTCAACTCTGTTCTTTTTTTTTTTTTTAACTCCACTGTATTTATTACCTGTTTTTGTTTTTTTTGTTTGTTTGTTTTTGATGTGCATATAGACCAAGATGTGGTAAATTTAAATGGCAGATGTTTTTGATGTGGTACATTTAAGGGAGAGAAAGCAGTTTAAAGAGCAGGGTGAAAAATCCAACAAGACTCCATCGAGAGTTTCTGAGCTCTCCCATCAGGGGCCAGTCCTCCTTTCCTCTCTCCTCTTACTCCCATGATTTCCAAGTTGTGATCCTTTCCTTATTTCTGAGGAATGACTTGGTTTCTCCTCTTCTTTTTTTGGCCTGAGAGAAGATGTTTTTGCACTTGTAGCTATGAGGAACAGATTGTCCACTAGGGAGGCCAGCTGATCATTTTCTGCCAGAGTCACACAGAGCAGTCACACCTTATTTTGAAAACCACTGTCTGGGGTCTTTGTCCTCACATATGCAGGTCTAGTGTCCCCACAAAGTGATCAGATGGATATATAAAGTGGAGTGCCAATGTATTAATTTACTGTGAGAAACACAATTGCTAAGTGGGTCAGATATCTGTCTCAGCTGGTCAGTACACCTTCCAGCAGGAAAATCTACATAAGAACAACTAAATCACAATCTGTAGAGTGCTTGATGACCCCAGAATTGGTGCAAGGGGACACATTCTTGCTTGTTAGCACCTGCTCTCTGGAGTTTGCTATTTTCTCACACACAGTGTATTAGTTCACAGAATGTTCTCCAAGGAGGACAGGGGGCTTTGCCCATAGCCATGTGCTGTGGGCAGCAGAGCTAGGAAGAAGCACAGGCATCTCCCAGCCCAGGTGTTTCCCACTTAACTGCATTGCCCTTTTCATCTTTTTTTTTTCCCCAATAGCTTCAGGACATTCAGTACATTGTGCTTTTTAGAGGTTGATGATTCCACTGCCTGAGCTGCCTTCACCTCTCTTTCTTTGGAAATTGCCATCTTTGAGCATTGTATGTCTCTGTAACATCTCTGCATCTCCTTTTCACTCTGGCCTCCCTTTCTCCATTGTCCTTCTAGCTTCTGGTTGCCCCAAACCCCACAGACTGTGTAACAAAACCCAAAACCTATTGGTTTAAAACAATACCCATTTTATTTTCTTTCATAGTTTCTATGGGTCAGGAATTTGGATATGGCTTGGGTAAGCAGTTCTGGCTTCTCATGGAGTTGGAGGCAAGTGGTGGCTGGAACAGAAATGGGGCAGCCAGGGGTGGTGGCCAGGCATCAGCTACATCTCCTCCATGTAGTCTCAGGAACTCTCCATGTAATCTCTCTGTGTGGGTTGGGCTTCCTCACAACATGGTGGCCTCAGGGCAGTCACTGCTTACATGGCAGCTAGCTTCCCTCAGAGTGAGTATCCCAAGAGATCACAGTCAAAGTGCATAGCATTTATATAATCTAATCTTGGAAGTCACAAAATGTCATTCTTGTGATACTCTCATTGGTGAAGAAGTCATAAAATCCTGCTCAGGTTCAAAAAGAGGGTGTATAGAACCCAACACTCAATAGGAAGATTGTCAGAGTTACATTGTAAGAAGAGCATGTAGTTGGGAGATATCATTGTGGCCATTTTGGGAAAGATGCAACATGTCACAATGTCATGTTCTCCATCGTCTCCCCGTTCCACCTTGTACTGGTTTCCAAGGGTAGTCGTTTAAAAGTACCACAAAAACTGGGTGGCTTGGAACAACAGAAATTTATTGTTTCACAGTTCTGGAGGCCAGAAGTTCAAAATGAAGTGTTGGCAGAAACATGCTGCCTCTAAAGGGACTGGGAAAGGATCTGTTCCAGGCTTCCCTCCTATCTTCTGGTTGTTCCTTGCCTTCTGGCTGCGTAACTCTAGTCTTCATTTGGTGTTCTCCCTGCATGCATGGCTTTGTGTCCAAATTTCCTTTTTTCATGAGGCCATCAGTCATACTGGATTAGGGACCCACTCTACTACTGCAGGATGACCTCACCTTCCCAAATTACATCTGCAACAACCCTATTTCCAAAGAAGGCCACATTCTGAGGTACTGGGGGTTATAACTTCAACATGAATTTTTTGGAGGAAACAATTCAACTCCTAACACATCTCTACCCAACCTCTGTAGGTTCCCTCAATCCACCAAAATTTTTTGGCTCCACTGGATTATCTAGCAGTTAGGAAACCAAGATCATTAAATGAATTCACCGCAACTACAGTGAGACTGACTACCTTAGCTTACCTCTGTGAAAGGAGTTAAGCCAAAGGAATCTGTGGAATTTTGGAGAGTTTGGGAGCATTTGGGGGCAGGAGGCAAATGTTCTTCCTTTAAATCACAACACTTAGTTCTCTTCCATTTATAAGACTCACCCCTCCATCCCAACCCCTGCACCACAGGACAAGGAAGTGTTCTTGGTCTTCAACTTTCATCCCTGATGGTGAAAGCAGTTGCTCCTGACCTATTTGCCCACCAGCTTCTCCTCTGGAGCCTGAGGCTTCTGATGCCTGCCTGGCTGGTTCTCAGTAAGAAGGTCAAGTTCAACCAGAGGGGAGATGCTGATGCCTTTCAGTACTTAAATATGAGTTCAGACCCTGGGGCCTGGACATAAGATTTGGGGTCCCCTGGATATAAGATTTCTGAAAACACTCAGACTGTGGAGACCCCTGCTGAGGGAGAAGCCCCAAACTGTGGCTTCAGGGGAATGCACCAAGGCTCTCATTGAGGCCACCTTCTCCAACAAGCTCCCCTCCTGCTTCCCCATGGCTGGCATGGCTGAGGAAAAAGGACACTGAGCACAGCCCGTGCATGAGCGGCTTGCCATGCAACAGGATAAAACCCATAATGCCACTCAGCAAGCCTTGGTTGTAAATCTAGTTTGATTACATTTGTAATCAAATGATGGCCATTTGTTCTGTTTCTGGTTTGTGAACCAACTGAAGACATAAGCAGGGCCTCAGCTAACCCACAAATAGCACATGTGTGCAAACTGGAAAAATGAACCCTTCTTCTGGGAGGACGCCAGCCCAGGCCAGGTCACCCGGCTTGGCCAGCAGAACACAGAGTAGATTTTGGTCCCGTTTGTTCCCCAGTGGGGTATCTATCCTTGTGCAGGGCACAAGCCTACATGGTGGCTCTGGTCATATCATTAGAAAATAGACAGAAATGGGCTGCACACCAGAATGAATGAATTGAATTGAAAGGGAGGAGTGATGGTGGAAAAAAAAACAAGTCAATTCATTTAGACTGGTAGAACCAGAACCACTGTGTAGTACATCCAAACGGTTAAAATTCCCTGGAAGATGTTACATAATCCTATCATGGTGTTTATTTATGGAAATCTATTTTAAAAATTTTATGTAATACTGCACAGTCTGTTTGCATGATGCCTTGTACGTAGTAGCAACTCAGTAAATACTTTTTGAATGAACTAGTATAGTATTTTAATTAGCTAGTCTTCATGTACTGGTACAAAAGAACAGTGTCATCTTACAGCTGAAGTCATAGAGGGGAAATATCCCACTCAAGATCATATAACATTCCAGGTACTCAGGATGAATGGTTTGAGGACTGGTCTGAATTCTTCAAAGGTTTCAGCTGTATTAACATTCTCCATCTAATAAACTTTATCTTGTCATTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153029-MR1:NM_001194999:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.205
Domain overlap (PFAM):
C1:
PF064417=EHN=PD(9.2=44.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGGAGTTGGTGTTCTAGT
R:
AGGGAAGCGTTGTGTCATGAG
Band lengths:
355-1902
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)