BtaINT0095642 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51084983-51085328:+
Coord C1 exon
chr22:51084983-51085089
Coord A exon
chr22:51085090-51085188
Coord C2 exon
chr22:51085189-51085328
Length
99 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GCTCATTCCCTTCACCGTAGGTA
3' ss Score
8.62
Exon sequences
Seq C1 exon
ACCCGTGATCCTGAACCAGCGTGTGGCCCTGATCTGCCTGCCCCCTGAGCGGTATGTGGTGCCTCCAGGCACCAGGTGTGAGATTGCAGGCTGGGGTGAGACCAAAG
Seq A exon
GTAAGAGAACAGCAGAGGCGTGGGCTTCTCCAGGCCAATAGGCCCCAACTTGGTTCCCACCTGCAGACCCTCTCCTTCTGCTCATTCCCTTCACCGTAG
Seq C2 exon
GTACAGGGGATGACACGGTCCTGAACATAGCCCTCCTGAGTGTCATCTCCAACCAGGAATGTAATGTCAAGCACCGAGGACGCGTACGGGAGAGTGAGATGTGTACTGCAGGACTGCTGGCCCCAGTGGGAGCCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585:ENSBTAT00000030663:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(16.3=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCCTGAACCAGCGTGTG
R:
TCCTCGGTGCTTGACATTACA
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]