GgaINT0020673 @ galGal4
Intron Retention
Gene
ENSGALG00000002722 | MST1
Description
hepatocyte growth factor-like protein precursor [Source:RefSeq peptide;Acc:NP_990544]
Coordinates
chr12:2482637-2483195:+
Coord C1 exon
chr12:2482637-2482743
Coord A exon
chr12:2482744-2483055
Coord C2 exon
chr12:2483056-2483195
Length
312 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
CTGCTGCCCTGTCCCCGCAGGCA
3' ss Score
13.15
Exon sequences
Seq C1 exon
GCCAGCTGTGCTGAACAAGCGCGTGGCCCTGATCTGCCTGCCGCCCGAGCGCTACATTGTGCCTGCTGGCACCACCTGTGAGATTGCTGGCTTTGGGGAAACCAGAG
Seq A exon
GTACTGCTGTGGGCAGCCCCACCACGGTGTCCCACTGCGATGGTGTCCCCTATCTAGGGCAGTCCCTTCCACAGCACCCCCAGGGTCATGGCATCCCCCTGCCCACGTCCACTCATGGCGTCCCCCTACCCATGGCATCTCTTTCCCAAGGCATCTTCTTGCTCATGGAATCCCCTCGCTCCTGGCAACCTCCTGCCCACATCATCCCCTTTCCGTAGCATTTCCCTACCCGTGGCATCCCCCACCCATGCCACTCCCCACCTACCACTTTCCCATGCCCATACATGCCTTGCTGCTGCCCTGTCCCCGCAG
Seq C2 exon
GCACAGCGGATGGCCATGTGCTGAATGTGGCAAAGCTGCCAGTGATGGCACATGCTGAGTGCCAGGCAGCACTGCGTGGGCGCCTGAAGGAGAGCGAGCTGTGCACAGCCCCGCTGCGTGCTGGTGTGGGTGCCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722:ENSGALT00000004292:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(16.3=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAACAAGCGCGTGGCC
R:
TCACAGGCACCCACACCA
Band lengths:
236-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]