BtaINT0095645 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51081931-51082238:+
Coord C1 exon
chr22:51081931-51082043
Coord A exon
chr22:51082044-51082123
Coord C2 exon
chr22:51082124-51082238
Length
80 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TCTGGGTCTTTTGCTCCCAGACT
3' ss Score
7.51
Exon sequences
Seq C1 exon
GGCCTTCCACTACAACTTGAGCAGCCATGGTTGCCAGTTGCTGCCATGGACCCAGCACTCACCTCATACACGACTGCAGCGTTCCGGGCGCTGTGACCTCTTCCAAAAGAAAA
Seq A exon
GTGAGTGGCTGCGAAGGGTGCTCTGGGGAGAGGGCTGCTGAGGTCTCCAGCCTTGTTGATTCTGGGTCTTTTGCTCCCAG
Seq C2 exon
ACTATGTTCGCACCTGCATCGTGGACAACGGGGTCGAGTACCGGGGCACTGTGGCCATCACCGTGGGTGGCTTACCCTGCCAGCGCTGGAGCCACAGGTTTCCCAATGACCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585:ENSBTAT00000030663:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=FE(45.8=100)
A:
NA
C2:
PF0002421=PAN_1=PD(1.2=2.6),PF0005113=Kringle=PU(42.9=84.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGCACTCACCTCATACA
R:
GGAAACCTGTGGCTCCAGC
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]