MmuINT0101363 @ mm10
Intron Retention
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:108081385-108081698:+
Coord C1 exon
chr9:108081385-108081497
Coord A exon
chr9:108081498-108081583
Coord C2 exon
chr9:108081584-108081698
Length
86 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
CCTTCCTCCATTGCTTCCAGATT
3' ss Score
9.19
Exon sequences
Seq C1 exon
GGCCTTCCACTACAACATGAGCAGCCATGGTTGCCAGCTGCTGCCGTGGACCCAGCACTCGCTGCACACACAGCTATACCACTCGAGTCTGTGCCATCTCTTCCAGAAGAAAG
Seq A exon
GCAAGTGGTGGTGAGGAGGGGAAACAGGCTGAGTAACAGGGGCCACGAGGCCTCAGGCCCTGTTGACCTTCCTCCATTGCTTCCAG
Seq C2 exon
ATTATGTGCGGACCTGCATTATGGACAATGGGGTCAGCTACCGGGGCACTGTGGCCAGGACAGCTGGTGGCCTGCCCTGCCAAGCCTGGAGTCGCAGGTTCCCCAATGACCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591:ENSMUST00000035211:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=FE(40.4=100)
A:
NA
C2:
PF0002421=PAN_1=PD(1.1=2.6),PF0005113=Kringle=PU(42.9=84.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACATGAGCAGCCATGGTT
R:
AGCTGTCCTGGCCACAGT
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types