BtaINT0095648 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51082540-51082929:+
Coord C1 exon
chr22:51082540-51082656
Coord A exon
chr22:51082657-51082803
Coord C2 exon
chr22:51082804-51082929
Length
147 bp
Sequences
Splice sites
5' ss Seq
CCGGCAAGT
5' ss Score
3.16
3' ss Seq
CGCCCGGCCACCGCCCCCAGGTT
3' ss Score
7.16
Exon sequences
Seq C1 exon
CCACTTGCCTTTGGTGCAATGGCGAGGATTACCGCGGCTCAGTGGACAGCACCGAGTCAGGACGCGAATGTCAACGCTGGGACCTGCAGCACCCGCACCCACACCCCTTCGAGCCCG
Seq A exon
GCAAGTACGCGGGGGCGGGCTCGGCGCGAGAGGAGGGTGGGCAAGGGGAGGGCCGAGGTCTCCAGGGGCGGGGCGATAGAATGCCCAGTGGATGGGGTCAGACAGGGGAGTACCAGGCTCTTGTTTACGCCCGGCCACCGCCCCCAG
Seq C2 exon
GTTTCTGGACAAAAATCTGGACGACAACTATTGCCGGAATCCGGACGGCTCGGAGCGGCCCTGGTGCTATACCACCGACCCGCAGATGGAGAGAGAGTTCTGCGACCTCCCCCGCTGCGGTACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585:ENSBTAT00000030663:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.674
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(88.1=92.5)
A:
NA
C2:
PF0005113=Kringle=PD(9.5=9.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTGCCTTTGGTGCAATGG
R:
GGTCGCAGAACTCTCTCTCCA
Band lengths:
223-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]