HsaINT0105706 @ hg19
Intron Retention
Gene
ENSG00000173531 | MST1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:HGNC Symbol;Acc:7380]
Coordinates
chr3:49724117-49724500:-
Coord C1 exon
chr3:49724380-49724500
Coord A exon
chr3:49724236-49724379
Coord C2 exon
chr3:49724117-49724235
Length
144 bp
Sequences
Splice sites
5' ss Seq
CAAGTACGC
5' ss Score
6.23
3' ss Seq
CGCCCCATTACCGCCCCCAGGTT
3' ss Score
6.5
Exon sequences
Seq C1 exon
CCGCGTGTGTCTGGTGCAATGGCGAGGAATACCGCGGCGCGGTAGACCGCACGGAGTCAGGGCGCGAGTGCCAGCGCTGGGATCTTCAGCACCCGCACCAGCACCCCTTCGAGCCGGGCAA
Seq A exon
GTACGCGTAGGCGGTATCGGCGTCCTGGGGGCCGGGCTAGGGAAGGTCCAGGACTCCAGGGGCAGGGCTCCGTGTAGGGCAATTGGGCGGGGCCAGATAAGCCAGAGTCCCAGGGTCTTGTTCACGCCCCATTACCGCCCCCAG
Seq C2 exon
GTTCCTCGACCAAGGTCTGGACGACAACTATTGCCGGAATCCTGACGGCTCCGAGCGGCCATGGTGCTACACTACGGATCCGCAGATCGAGCGAGAGTTCTGTGACCTCCCCCGCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173531-MST1:NM_020998:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.276 A=NA C2=0.049
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(48.7=92.7)
A:
NA
C2:
PF0005113=Kringle=PD(50.0=95.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGTGTGTCTGGTGCAAT
R:
CGGGGGAGGTCACAGAACTC
Band lengths:
234-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)