BtaINT0095732 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004073 | MTA3
Description
Bos taurus metastasis associated 1 family, member 3 (MTA3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101964]
Coordinates
chr11:25172446-25173982:+
Coord C1 exon
chr11:25172446-25172519
Coord A exon
chr11:25172520-25173290
Coord C2 exon
chr11:25173291-25173982
Length
771 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTGTTTCTTTCCTTTTCCAGAAC
3' ss Score
12.91
Exon sequences
Seq C1 exon
AAAGGCTCATGAAGTGAAGGCGCAGCTCTGCTCTATCCTGCAGCCCTTCCTCAGGATGGCGGGAGGCTGTGAAG
Seq A exon
GTGAGCGTCCCTGTCCCCTAACCGCATGTCCCCTCCCGGTTGCAGAGCGTGTGACGAGAGAGAGTATCCAGGCCCTGCCTTGGCCCGAGCCCCTGATCCCGTCTCAGCAGGCACCCCCCAGTTCCCTCCTAGCCGCTTAGCTAGTAAACAAGCAAAAGTTTGCACAAGCCACTGTGTGACACCAGATGGTGACAATGTAGTTGCCCGGCACTGCTTCTCTTTCCCTTGTTTCTCTTGAGAATCTCTAGATGCGCAGCTCTGGAACAGGAGAGTTGAAGGTTTGAGGGGGAAGGAGGGACATTGTGACACTGGGTGTTTGGGGTCACTCCCCTCCTATGGAAAAATATGTCCCTAGCTTCCGAGTGCCTACATCGTATGATTGATTATGGTTACCTGAGATCAGGGCATGCCTCCTGTAGGCCTGTTGGTTCCCCATTCCCTAGCGTCCAGTCAGAGAGGTTCCACGATGTTGCTCCGGTATGCGTGTCAGCACTTGCCTGCCTGGCTGGTGACCACTGCACCTGCCCTTCCCAACTCCAGCTTTCAAGATACCTCAGTGTCACTCAGATTTTCGTGGCCTCAGTTGAACTTTCCTTTGGTCCACTCTTCAACAACATTGAATCAGTGCCCAGCCTCCTTTCCTTGAAGGCTGTGATGATGATGAAGGCTGTGATGATGATGCTTGGTGGGAGGTCTGATCCGTCCTTTCTCTCCCCTTGCCTCTGCCATCAGCACCTGTCTAACTTCGACCCTGTTTCTTTCCTTTTCCAG
Seq C2 exon
AACTCACATGCTGCGTGTCAGACTGAGCTATTGCTGTTTAATCCTATAATCCAAGACTTGCTACACTGTCCCGCTGATGTCCATAGCCATGCCTGGGAAGGAGGCAGCCCCATTCCCAGCGTATCCCAGGGGAGACCTCTGCCTGCACCCCACAGAGCCTGGACCAGGCCGGGGAAGAGACTGCAGGAGCACGCGTCCCCGAAGCTGCGTCTCCTCTTGTGAATCAGTGTCCCCTTGCTTTCCTCCAGAGACCTCGCTGCCCCAGAACGGGACCTGCCTGGGGAATTGAGGGGCTGGGGGAGCTACTCCGAGACCTCCTTCTCCGGCACCCTGAACCCCGGGCACCGCGGCTCCGGGGCAGTGGGGCTGCTGCAGGCTCAGAGCCGCTGCAGCCCTGCATGTGCCAGCTTTGCTCTGTCGCCGGCTGTGTCAGTGTGGACTTGAGGGATACGGCATGTTTCTAAGTGGATTTTTCTTAAGAAATGTGCCAATGCTGATGTAGTTCAGGATGTTCCCCCCATCCCAGCTGTCACTGTCCCTCGGCTTTTTCTCAGTAGGCTTCATTCCCCGTTTTTTTAGTGGGGAATTTTGTCCTTCACCCCCTGCATCCTGTATTTGTCCCCCTGCCTTCATCCCTCCCAGGTACAGAATTACCTGTGGTTCTGACAAAAGATAAGCAAATCGTCTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004073:ENSBTAT00000033090:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATCCTGCAGCCCTTCCTC
R:
CTCCCCCAGCCCCTCAATTC
Band lengths:
345-1116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development