BtaEX0023080 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004073 | MTA3
Description
Bos taurus metastasis associated 1 family, member 3 (MTA3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101964]
Coordinates
chr11:25159177-25173982:+
Coord C1 exon
chr11:25159177-25159323
Coord A exon
chr11:25172446-25172519
Coord C2 exon
chr11:25173291-25173982
Length
74 bp
Sequences
Splice sites
3' ss Seq
CATATATCTCCCCATTCTAGAAA
3' ss Score
8.97
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGATCCATCCTTCGAAGAAACCTAATGTAATTCGATCTACACCAAGCCTGCAAACCCCAACCACCAAGCGGATGCTAGCCACCCCGAATCACACGTCTCTGAGCATTTTGGGGAAAAGAAACTACAGTCATCACAATGGCCTGGATG
Seq A exon
AAAGGCTCATGAAGTGAAGGCGCAGCTCTGCTCTATCCTGCAGCCCTTCCTCAGGATGGCGGGAGGCTGTGAAG
Seq C2 exon
AACTCACATGCTGCGTGTCAGACTGAGCTATTGCTGTTTAATCCTATAATCCAAGACTTGCTACACTGTCCCGCTGATGTCCATAGCCATGCCTGGGAAGGAGGCAGCCCCATTCCCAGCGTATCCCAGGGGAGACCTCTGCCTGCACCCCACAGAGCCTGGACCAGGCCGGGGAAGAGACTGCAGGAGCACGCGTCCCCGAAGCTGCGTCTCCTCTTGTGAATCAGTGTCCCCTTGCTTTCCTCCAGAGACCTCGCTGCCCCAGAACGGGACCTGCCTGGGGAATTGAGGGGCTGGGGGAGCTACTCCGAGACCTCCTTCTCCGGCACCCTGAACCCCGGGCACCGCGGCTCCGGGGCAGTGGGGCTGCTGCAGGCTCAGAGCCGCTGCAGCCCTGCATGTGCCAGCTTTGCTCTGTCGCCGGCTGTGTCAGTGTGGACTTGAGGGATACGGCATGTTTCTAAGTGGATTTTTCTTAAGAAATGTGCCAATGCTGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004073_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAATCACACGTCTCTGAGC
R:
CTCCTTCCCAGGCATGGCTAT
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development