HsaEX6013100 @ hg38
Exon Skipping
Gene
ENSG00000057935 | MTA3
Description
metastasis associated 1 family member 3 [Source:HGNC Symbol;Acc:HGNC:23784]
Coordinates
chr2:42722889-42756947:+
Coord C1 exon
chr2:42722889-42723035
Coord A exon
chr2:42752234-42752307
Coord C2 exon
chr2:42753374-42756947
Length
74 bp
Sequences
Splice sites
3' ss Seq
AGGTATCTTCCCTATCCTAGAAA
3' ss Score
6.21
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGATCCATCCTGCAAAGAAACCTAATGTAATTCGATCTACACCAAGCCTGCAAACCCCAACTACCAAGCGGATGCTAACAACTCCAAATCACACATCTCTGAGCATTCTGGGGAAAAGAAACTACAGTCATCACAATGGTCTGGATG
Seq A exon
AAAAGCTCATGAAGTGAAGACACAGCTCTGCTCCATCCTGCAGCCCTTCCTTGGCATGCTCTGAGGCTGTGAAG
Seq C2 exon
AACTCACGTGCTGTGTGTCAGACTGAGCTTTCCCTGATTCATTCTACAATCCAAGACTTGCTGCACTGTCCTGCTGATGTTCACAGCCGTGCCTGGGAAGAAGGCAGCCCCACTCCCAGTACATTTCAGTGGGAGACCTCTGCGTGCATCCATGGAGACGCAATGGGGCGGGGAAGGAACTGTGGGAGTGCACGTTCCAAATCCTGTGTCTCCACGTGTGGATCAGCAGCACCTCGCTTTCTTGTCAGAGACCTCGCTGTTACGGAGCGAGACCTGCTGAGAATTGAGGGGCTGAGGGAACCCCTCCACCTCCTCCCTTCTGCAGCGCCCTGCGCCCCACCCAGCAACAGCGGCCACTTGGCAGTGGGGCTGCTGCAAGCTCAGAGCCGCTGCCACCCTGCATGTGTCCGCTCAGCTCGGTCTTATGCTGTATAGTTACTAAATATGTACAGGAGGGCCATGGCATCTTTCTGAATGGATTTTTCTTAAGAAATGCGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000057935-'67-192,'67-190,73-192=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.940 A=1.000 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCTGCAAACCCCAACTA
R:
AGGACAGTGCAGCAAGTCTTG
Band lengths:
177-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains