BtaINT0096519 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51456409-51456773:-
Coord C1 exon
chr29:51456635-51456773
Coord A exon
chr29:51456514-51456634
Coord C2 exon
chr29:51456409-51456513
Length
121 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
3' ss Seq
GTGGGGGCCTGTGTTTCCAGCCT
3' ss Score
3.7
Exon sequences
Seq C1 exon
CACCTGCTCTGGAGGCCGCTGGACCTGCCAGGAGGCGCCGTGTCCGGGGACCTGCTCGGTGCTGGGCGGCGCCCACATCTCCACGTTCGACGAGAAGCAGTACAGAGTGCATGGGGACTGCAGCTATGTGCTGGCCAAG
Seq A exon
GTGCGGGCCTCCCCGGGCGGGCCCGCGGGCTCGGGAGACCAGCCCGGCTTTGGGCGGGCGGAGCGGGGAGGCCGAGGTGGGCTGGGGCCGACGAGCTCTGCGTGGGGGCCTGTGTTTCCAG
Seq C2 exon
CCTTGTGACAGCGGCGCCTACGCCGTGCTGGCCGAGCTGCGCAGGTGCGGGCTGACCGACAGCGAGACCTGCCTGAAGAGCCTGACGCTGAGCCTGGGCCACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(66.1=87.2),PF0009420=VWD=PU(18.3=59.6)
A:
NA
C2:
PF0009420=VWD=FE(22.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGCTCTGGAGGCCG
R:
CCCAGGCTCAGCGTCAGG
Band lengths:
237-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]