GgaINT0054944 @ galGal3
Intron Retention
Description
NA
Coordinates
chr5:15879013-15880520:-
Coord C1 exon
chr5:15880382-15880520
Coord A exon
chr5:15879124-15880381
Coord C2 exon
chr5:15879013-15879123
Length
1258 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
ACTTTTTTTTCTTCTTCTAGCTC
3' ss Score
10.76
Exon sequences
Seq C1 exon
TACTTGTGCAGGGGGTGAATGGACTTGTGTCACCCAGTCATGTCCAGCGACTTGCAGCATCGAAGGAGGCTCCCACATTACAACATATGATGAAAAATATTATTCCTTCTATGGAGATTGTAGCTATGTCCTAACCAAG
Seq A exon
GTAAAAGGAGTCACATTCCTTGCTAAAGTAATATGCTAATGGAAAACACTTTTATTAAATACAAGGATGTTTAATTTAAACTACTGGTAATTACAGCAATTTTCTGAAACTTAAAGGAAATGCATGGAAGCTTAAAAAGATCTCAATGGGCTTCCTGATAGTTTTGTAGAAAATAAATATATTTTAGCATTCTTATCTATTTAAACATTGTTTAAGAATTGCACTGAGTTTTTAGTTGCCATGAAACAGCCTCTACACTTCCCTTTTTTTTATATATATAAATTGAATATTCTCTGTCTGGTGTTTTGTAACTATCTCTTTCCGAGAAACATGCTCATTACCTCAATTGTTACTCCTCTTTTTGTCACAGTTAACATAGTTCTTTTAATTATTTTATTGACAGCATTTAGATTTGAATAATTAAACAGAACTCATGAGAGTAGATATTTCATTAAAATGACCAACTTTCCAAACAGTCTTTCCCAGTAAATGCAGAATGCACTAGAATTTAAAAGCGAAATGGTAAGAAGTCATACATGTATTTTAAAACCAGCATCAGAAATTACATATATAGAAAAAAATAACAGAAACAAAAACACTTAAGATTTACTGGACTTACTAAATCAGTACGGACTGAATTCTGAGTAGGTGTGTCTCAATTAATGACTACAGATTTCAAACTTCAGAATGCAATGTACATTTGGCTGTTGATTTGTACTGGGTGAGTACTGCAAAATCCATTTCATAAAGGCTTTATATTAAATAAAAGCTGCTATGAAAAAGCTCAAGCTGAATGTTACCAGGGAAGAGAACCATAAACACTTAAGAAATGAGCTAGAATGACAAAGTTTAGAAATAGATTAGACTAAATCAATGAAAATTTTCAGTGAAAAATCACAAGCATAGGGCTGGATCAACAATGTGAGCATAGATCAGACTTACATGTTAAACTCCCTTTTTGGCACCAGCATGTAAAATTAGATTCACAGAGGCCCTGGAAGTACACCAAATCCCTCAACCTGGATGATAATATCTAAAAAGCCCTAAATTTTAACATTAAATTTTCTTGTGGCTGTATCAGCCGACCTCAGTTTAGTATTGTTAACACCAAGAAAATGAGTTCTGAGTGTTTCTCTGTAATAACTTGGCCATTAGGCACACTTTGAATACAGCTCACAGAACAGGCTGTGGAAAAAAAACAAACACACTGAGTGTGATCTTTCTAGTACAGCGGACTTACTTTTTTTTCTTCTTCTAG
Seq C2 exon
CTCTGTGACAGCAATGATTTCACTGTTCTGGGTGACATCCACAAGTGTGGTCTGACTGACACTGAGACATGCCTCAAGGGCGTAGCCATCAGTCTAAGCGGAGGGCAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006740:ENSGALT00000010867:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(65.6=85.1),PF0009420=VWD=PU(18.1=59.6)
A:
NA
C2:
PF0009420=VWD=FE(23.2=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTGTGCAGGGGGTGAATG
R:
TTGCCCTCCGCTTAGACTGAT
Band lengths:
247-1505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]