BtaINT0096528 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51404682-51405107:-
Coord C1 exon
chr29:51405017-51405107
Coord A exon
chr29:51404792-51405016
Coord C2 exon
chr29:51404682-51404791
Length
225 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
AGTAGGGCCTGCTTTTGCAGACA
3' ss Score
4.15
Exon sequences
Seq C1 exon
CTGGAGCTGGACCCCAAGTACGCCAACCAGACCTGTGGCCTGTGTGGCGACTTCAACGGGCTCCGGGCTGTCAGCGAGTTCTACGCCCACA
Seq A exon
GTGAGTGCCCCGGGGCCAGGCGTGGTGGGTGGCCGACCCCAGCACAGTCCCTGGGAAGCTGGAGGTGCAGGGGTGGGTCTCACTGGGGCGCTGGGCAGGGGTCAAGTCAGGGGTGTCAACAGTTCCAGTGATGCCCCAGAGGGGGTGCTTCGGAGGTCCTGAGCACAGGCGGGAGCTCTGCCCCCAGAGCCCCCCAGGGTCTGCAAGTAGGGCCTGCTTTTGCAG
Seq C2 exon
ACACCAGGCTGAGCCCACTACAGTTTGGGAACCTGCAGAAGCTGGACGGGCCCACGGAGCAGTGTCAGGACCCCCTGCCCTCTCCCGCTGCTGACAACTGCACAGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(19.3=90.3)
A:
NA
C2:
PF087426=C8=PU(4.2=8.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCTGGACCCCAAGTA
R:
CTCGTCTGTGCAGTTGTCAGC
Band lengths:
201-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]